V

vr-codebase

Settings | Report Duplicate

0

I Use This!

Inactive

Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 26, 2025 — Jan 26, 2026 Showing page 130 of 136 Search / Filter on:
now allows read0 and read1+2, treated seperately	sb10	More...				over 16 years ago
allow rmdup filename to be supplied to collect_detailed_bam_stats	sb10	More...				over 16 years ago
[no comment]	pd3	More...				over 16 years ago
not needed now	tk2	More...				over 16 years ago
removed mouse/g1k specific bfa variables	tk2	More...				over 16 years ago
not needed now	tk2	More...				over 16 years ago
not needed now	tk2	More...				over 16 years ago
resurrected filterOutShortReads method	sb10	More...				over 16 years ago
minor POD correction	sb10	More...				over 16 years ago
minor POD/comment changes	sb10	More...				over 16 years ago
first fully working version of mapping pipeline on the bwa side	sb10	More...				over 16 years ago
added merge_and_check method; fixed other minor issues	sb10	More...				over 16 years ago
removed this example test script since just a pointless stub	sb10	More...				over 16 years ago
new util class for dealing with sam/bam files; test and test data for first and only function for testing bam file similarity	sb10	More...				over 16 years ago
updated to handle multiple values per lane	sb10	More...				over 16 years ago
resurrected Build.PL which was forgotten during manual merge of old dev branch to trunk	sb10	More...				over 16 years ago
test-qc not needed	sb10	More...				over 16 years ago
manual copy of updated dev modules, third part of manual merge	sb10	More...				over 16 years ago
adding new files from dev branch: second part of manual merge	sb10	More...				over 16 years ago
adding new folders from dev branch: first part of manual merge	sb10	More...				over 16 years ago
updated samtools	tk2	More...				over 16 years ago
updated samtools	tk2	More...				over 16 years ago
moved ReadQualityRecalibrator.jar to bin	sb10	More...				over 16 years ago
added broad recalibrator	tk2	More...				over 16 years ago
Now works with mouse or human	jstalker	More...				over 16 years ago
added java again	tk2	More...				over 16 years ago
deleted java	tk2	More...				over 16 years ago
readded java	tk2	More...				over 16 years ago
deleted java	tk2	More...				over 16 years ago
added samtools for turing	tk2	More...				over 16 years ago

←
1
2
…
126
127
128
129
130
131
132
133
134
135
136
→