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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jun 09, 2024 — Jun 09, 2025 Showing page 21 of 86 Search / Filter on:
Implement basic S3 download using S3TransferManager.	Seth Just	More...				almost 3 years ago
Begin work towards implementing S3 downloads.	Seth Just	More...				almost 3 years ago
Update httpclient version for compatibility with AWS SDK.	Seth Just	More...				almost 3 years ago
Disable JCL debug logs.	Seth Just	More...				almost 3 years ago
Add Javadoc to Log impl.	Seth Just	More...				almost 3 years ago
Clean up logging configuration after testing. Exclude additional logging implementation and direct SLF4J usages to the built-in RYO logger.	Seth Just	More...				almost 3 years ago
Exclude and ban dependency that used SFL4J for JCL logging.	Seth Just	More...				almost 3 years ago
Add configuration for JCL to direct AWS log statements to built-in "RYO" logging impl.	Seth Just	More...				almost 3 years ago
Add test for S3 URI download.	Seth Just	More...				almost 3 years ago
Initial unit tests for new utility.	Seth Just	More...				almost 3 years ago
Migrate URI downloading to a utility class.	Seth Just	More...				almost 3 years ago
added work towards prm generator	Brian Searle	More...				about 3 years ago
Don't overwrite archetypal RTs with each file to be aligned, instead use putIfAbsent so first value "sticks".	Seth Just	More...				about 3 years ago
Begin commenting key steps in the alignment and quantification process.	Seth Just	More...				about 3 years ago
added stub of library caching class	Brian Searle	More...				about 3 years ago
removed unused functions in LibraryInterface	Brian Searle	More...				about 3 years ago
fixed test checking percolator version	Brian Searle	More...				about 3 years ago
Merged in remote-percolator (pull request #47)	Seth Just	More...				about 3 years ago
Merged in external-percolator (pull request #46)	Seth Just	More...				about 3 years ago
Update feature file writing to support Percolator 3.6 by tweaking column names and accession formatting (matching the updated test data).	Seth Just	More...				about 3 years ago
Update test features file with new column names required for Percolator 3.6, as well as appropriate protein identifiers.	Seth Just	More...				about 3 years ago
Skip Percolator 3.6 test on platforms w/o direct executable download.	Seth Just	More...				about 3 years ago
Begin writing test for Percolator 3.6.	Seth Just	More...				about 3 years ago
Fix incorrect version string assertions for percolator 3.01.	Seth Just	More...				about 3 years ago
Fix constant initialization bug.	Seth Just	More...				about 3 years ago
Implement parsing for remote Percolator URIs.	Seth Just	More...				about 3 years ago
Implement PercolatorVersion backed by remote URI. Enable/improve tests.	Seth Just	More...				about 3 years ago
Merge branch 'master' of bitbucket.org:searleb/encyclopedia	Brian Searle	More...				about 3 years ago
fixed bug with Percolator PEP being subtituted with an integration score during quant	Brian Searle	More...				about 3 years ago
Restore default of v3.01, but keep changes to more consistently choose the default. Add better definition/parsing behavior for `-percolatorVersion 3` to ensure future consistency.	Seth Just	More...				about 3 years ago

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