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Commits : Listings

Analyzed 6 minutes ago. based on code collected 1 day ago.
Nov 06, 2025 — Nov 06, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Added handling of '?' and other non integer string for the charge. Added a test to ensure this is handled appropriately.
Anthony Bradley
More... over 10 years ago
Added handling of '?' and other non integer string for the charge. Added a test to ensure this is handled appropriately.
Anthony Bradley
More... over 10 years ago
Refactored ChargeAdder and fixed bugs where it wasn't adding charges to all groups. Changed the method to a static. And updated the PDBFileParser and the SimpleMMCifConsumer. Added a basic test to check that charges are being added appropriately.
Anthony Bradley
More... over 10 years ago
Refactored ChargeAdder and fixed bugs where it wasn't adding charges to all groups. Changed the method to a static. And updated the PDBFileParser and the SimpleMMCifConsumer. Added a basic test to check that charges are being added appropriately.
Anthony Bradley
More... over 10 years ago
Fixed a couple of bugs in structure tools about empty arrays
Anthony Bradley
More... over 10 years ago
Fixed the mmtf structure reader so entity to chain information is stored both ways
Anthony Bradley
More... over 10 years ago
Merge pull request #33 from heuermh/style-fix
Michael Heuer
as Michael L Heuer
More... over 10 years ago
making access method public
Andreas Prlic
More... over 10 years ago
Merge pull request #467 from abradle/cache
Andreas Prlic
More... over 10 years ago
Merge pull request #466 from sbliven/fix-455
Andreas Prlic
More... over 10 years ago
Merge pull request #464 from abradle/mmtf_dev
Andreas Prlic
More... over 10 years ago
Automatically re-download ECOD if the cache is >2weeks old
sbliven
as Spencer Bliven
More... over 10 years ago
Fix #455. Use parsing params for AtomCache
sbliven
as Spencer Bliven
More... over 10 years ago
Fix #455. Use parsing params for AtomCache
sbliven
as Spencer Bliven
More... over 10 years ago
Updatees to the atom cache behaviour
Anthony Bradley
More... over 10 years ago
Merge pull request #5 from josemduarte/mmtf_dev
Anthony Bradley
More... over 10 years ago
New default location for ligands files
Jose Manuel Duarte
More... over 10 years ago
Improvements to new parameters in DownloadChemCompProvider
Jose Manuel Duarte
More... over 10 years ago
Reader and Writer updated to store the single letter code as ? if appropriate
Anthony Bradley
More... over 10 years ago
Updates the downloadchemcomprovider to 1) be able to alter the server 2) added a flag to alter the way the urls are constructed.
Anthony Bradley
More... over 10 years ago
Fix minor style issue with variable names
Michael Heuer
as Michael L Heuer
More... over 10 years ago
Merge pull request #32 from gwaldon/bb001
Michael Heuer
as Michael L Heuer
More... over 10 years ago
Writing of chunknum & chunkleft
gwaldon
More... over 10 years ago
Merge pull request #461 from DevFactory/short-circuit-logic-should-be-used-in-boolean-contexts-fix-1
Andreas Prlic
More... over 10 years ago
#459 fixing javaws dependency in biojava-structure-gui. No longer using Biojava's specific Maven repo, but the version that comes with the system.
Andreas Prlic
More... over 10 years ago
Merge pull request #458 from abradle/mmtf_beta
Andreas Prlic
More... over 10 years ago
squid:S2178 - Short-circuit logic should be used in boolean contexts
Mohamed Ezzat
More... over 10 years ago
Updates to the Chain and Writer to fix https://github.com/biojava/biojava/issues/457
Anthony Bradley
More... over 10 years ago
Pom now looks for jars in the https://github.com/biojava/maven-repo and not biojava.org
Anthony Bradley
More... over 10 years ago
Removed unneeded file
Anthony Bradley
More... over 10 years ago