14
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Commits : Listings

Analyzed 27 minutes ago. based on code collected 1 day ago.
Nov 06, 2025 — Nov 06, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
distance have to be looked up by element name, not atom name More... over 10 years ago
squid:S2130 - Parsing should be used to convert Strings to primitives More... over 10 years ago
Merge pull request #499 from DevFactory/release--primitives-should-not-be-boxed-just-for-String-conversion-fix-1 More... over 10 years ago
Merge pull request #498 from DevFactory/release--array-designators-should-be-on-the-type,-not-the-variable-fix-1 More... over 10 years ago
Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids. More... over 10 years ago
Adds a new definitions file so the code can correctly detect Metal bonds. Slightly more efficient representation of standard amino acids. More... over 10 years ago
Merge pull request #501 from abradle/master More... over 10 years ago
Refactored getChain(int chainIndex) and getChain(int modelNr, int chainIndex) to getChainByIndex(). This avoids ambiguity around whether the input can by a char (implicitally converted to an int). More... over 10 years ago
Fix chain ID duplication bug in repeats alignment More... over 10 years ago
Fix bug with open symmetry axis reconstruction
sbliven
as Spencer Bliven
More... over 10 years ago
Fix symmetry axes position bug
sbliven
as Spencer Bliven
More... over 10 years ago
Add information for construction of full list of symmetry axes.
sbliven
as Spencer Bliven
More... over 10 years ago
Refactor SymmetryAxis class to encapsulate individual axes
sbliven
as Spencer Bliven
More... over 10 years ago
squid:S2131 - Primitives should not be boxed just for String conversion More... over 10 years ago
squid:S1197 - Array designators should be on the type, not the variable More... over 10 years ago
Merge pull request #495 from andreasprlic/master More... over 10 years ago
Merge pull request #497 from abradle/v0.2.0 More... over 10 years ago
Fixes to the SeqRes generation code More... over 10 years ago
Merge pull request #496 from DevFactory/release--literal-boolean-values-should-not-be-used-in-condition-expressions-fix-1 More... over 10 years ago
Fix for sequences that go on after the group More... over 10 years ago
Updates to parse the SeqResGroups correctly More... over 10 years ago
Simplify SymmetryAxis implementation & fix getSymmetryAxes()
sbliven
as Spencer Bliven
More... over 10 years ago
Put mmtf version in master pom More... over 10 years ago
1) Updated the mmtf test data to v0.2.0 2) Updated the mmtf structure reader to use the given single letter code 3) mmCIF tests use mmCIF atom cache. More... over 10 years ago
squid:S1125 - Literal boolean values should not be used in condition expressions More... over 10 years ago
Adding TestSymmetryAxes prior to refactoring
sbliven
as Spencer Bliven
More... over 10 years ago
Default behaviour is now to use mmtf More... over 10 years ago
Update to 0.2.0 of mmtf More... over 10 years ago
Updates to remove the DefaultEncoder and Decoder More... over 10 years ago
Merge branch 'master' of github.com:biojava/biojava into v0.2.0 More... over 10 years ago