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Analyzed 1 day ago. based on code collected 3 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 05, 2025 — Nov 05, 2026 Showing page 100 of 243 Search / Filter on:
Some further optimisations - and fixes to make these optimisations pass the tests	Anthony	More...				almost 11 years ago
Merge branch 'master' into header343	Matt Larson	More...				almost 11 years ago
SimpleMMcifConsumer and PDBFileParser return quickly when parsing non-header sections in headerOnly mode. Updated Test2JA5 where expected #'s of SEQRES chains != AtomChains. Added speed test in TestHeaderOnly.	Matt Larson	More...				almost 11 years ago
Slight code cleanup	Anthony	More...				almost 11 years ago
Making demos compile but not package into jar #387	Jose Manuel Duarte	More...				almost 11 years ago
Merge branch 'master' of https://github.com/biojava/biojava	Anthony	More...				almost 11 years ago
Updated the SecStrucCalc function and the Test 1) Function is a lot faster for big structures. e.g. 3j3y goes from 30min+ to 40seconds. This is by using grid and contactsets to find groups for which the calculation needs to happen 2) Class does not need to be recreated for each run through - Class global variables are reset when .calculate is called The tests pass fine	Anthony	More...				almost 11 years ago
Fixing some bugs in internal symmetry	lafita	More...				almost 11 years ago
Merge branch 'master' into cesymm	lafita	More...				almost 11 years ago
Merge branch 'master' of https://github.com/biojava/biojava.git	lafita	More...				almost 11 years ago
Fix altLocs bug in MMCiff	lafita	More...				almost 11 years ago
Merge pull request #382 from andreasprlic/master	sbliven as Spencer Bliven	More...				almost 11 years ago
Fix display bugs	lafita	More...				almost 11 years ago
Adapt CeSymm methods to new Refiner interface	lafita	More...				almost 11 years ago
Change SymmetryRefiner interface to return MultipleAlignment	lafita	More...				almost 11 years ago
Create new GraphRefiner for symmetry	lafita	More...				almost 11 years ago
Create method to obtain symmetry jgrapht	lafita	More...				almost 11 years ago
#384 make EcodDomain implement StructureIdentifier	Andreas Prlic	More...				almost 11 years ago
Merge branch 'master' of github.com:biojava/biojava	Andreas Prlic	More...				almost 11 years ago
#383 adding NullPointerException checks to at least somehow get DemoCeSymm unit test to work again.. for now.	Andreas Prlic	More...				almost 11 years ago
#383 updating of demo scripts to new StructureIdentifier convention	Andreas Prlic	More...				almost 11 years ago
#383 this unit test references code from the testing framework. Disabling for now.	Andreas Prlic	More...				almost 11 years ago
Merge pull request #363 from emckee2006/master	Andreas Prlic	More...				almost 11 years ago
Merge pull request #381 from abradle/master	Andreas Prlic	More...				almost 11 years ago
getting Junit test to work on installations that have empty spaces in directory names	Andreas Prlic	More...				almost 11 years ago
Added class to allow writing of Group to SDF	Anthony	More...				almost 11 years ago
Added functionality to write groups to MDL molblocks (as strings) Added function to Group interface Added function to HetatomImpl implementation of that interface	Anthony	More...				almost 11 years ago
TestBond using FileParsingParameter.alignSeqRes true	Matt Larson	More...				almost 11 years ago
Issue 343: header-only parsing of SEQRES * FileParsingParameters.storeEmptySeqRes option is dropped. * FileParsingParameters.alignSeqRes is true by default. When false, it behaves will store seqres that has been parsed, but without aligning to replace with AtomGroups (behaviour previously of storeEmptySeqRes). * FileParsingParameters.headerOnly when true will still parse SEQRES since this would belong to the header. * PDBFileParser and SimpleMMcifConsumer were updated for matching behaviors to the options. * Existing unit tests were updated for this change. * Added a new unit test to specifically test the setHeaderOnly() option and parsing of SEQRES.	Matt Larson	More...				almost 11 years ago
Adapt SymmetryGUI to latest changes	lafita	More...				almost 11 years ago

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