A tool to experiment with a simple, synchronous simulation of "pipes" in Python. It enables pipelined communication between functions in a single process, not IPC between processes.
Exome Variant Analysis Pipeline (NGS Data). Developed in R language, calling external programs for specific tasks. It can be run in parallel using many processors from the same machine, and can be easily extended to run in computer clusters (HPC). Still in its early stages, it's a work in progress
... [More] that is being used already for production in some research centers.
Features:
* Quality Control
* Mapping in a reference genome
* Tasks related to variants:
** Calling
** Filtering
** Annotating
** Reporting effects and basic statistics
* Sending an email once the run is finished.
More information: ueb(a)vhir.org [Less]
Fluid dynamics component of Chemical Engineering Design Library (ChEDL)
fluids is open-source software for engineers and technicians working in the fields of chemical, mechanical, or civil engineering. It includes modules for piping, fittings, pumps, tanks, compressible flow, open-channel flow, and more.
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