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alchemlyb is makes alchemical free energy calculations easier to do by leveraging the full power and flexibility of the PyData stack. It includes:
- Parsers for extracting raw data from output files of common molecular dynamics engines such as GROMACS, AMBER, or NAMD.
- Subsamplers for obtaining
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uncorrelated samples from timeseries data.
- Estimators for obtaining free energies directly from this data, using best-practices approaches for multistate Bennett acceptance ratio (MBAR), BAR, and thermodynamic integration (TI). [Less]
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