Chaste - Cancer Heart And Soft Tissue Environment
Chaste is a computational biology simulation package. It provides a cardiac simulation package which provides a way to use CellML electrophysiology models in tissue simulations. The cardiac code is suitable for high performance computing on large
... [More] supercomputers.
The cell-based side of the code provides a variety of agent-based models (cellular automata, cell-centre-based (on and off mesh), cell vertex, cellular Potts models) for use in biological settings where cells divide and die according to other models.
For details please see the recent overview paper in PLoS Computational Biology www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002970 [Less]
Public repository for SeqWare pipeline development and evaluation. Closely affiliated with the SeqWare group (http://seqware.io) and based at OICR (http://oicr.on.ca)
The open source SeqWare project is a portable software infrastructure designed to analyze massive genomics datasets produced by contemporary and emerging technologies, in particular Next Generation Sequencing (NGS) platforms. It consists of a comprehensive suite of infrastructure tools focused on
... [More] enabling the end-to-end analysis of sequence data – from from raw base calling to analyzed variants ready for interpretation by users. [Less]
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