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Chaste

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  Analyzed 5 months ago

Chaste - Cancer Heart And Soft Tissue Environment Chaste is a computational biology simulation package. It provides a cardiac simulation package which provides a way to use CellML electrophysiology models in tissue simulations. The cardiac code is suitable for high performance computing on large ... [More] supercomputers. The cell-based side of the code provides a variety of agent-based models (cellular automata, cell-centre-based (on and off mesh), cell vertex, cellular Potts models) for use in biological settings where cells divide and die according to other models. For details please see the recent overview paper in PLoS Computational Biology www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002970 [Less]

1.44M lines of code

9 current contributors

6 months since last commit

3 users on Open Hub

Activity Not Available
5.0
 
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pipedev

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  No analysis available

Public repository for SeqWare pipeline development and evaluation. Closely affiliated with the SeqWare group (http://seqware.io) and based at OICR (http://oicr.on.ca)

0 lines of code

2 current contributors

0 since last commit

2 users on Open Hub

Activity Not Available
0.0
 
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Mostly written in language not available
Licenses: No declared licenses

SeqWare

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  Analyzed 4 days ago

The open source SeqWare project is a portable software infrastructure designed to analyze massive genomics datasets produced by contemporary and emerging technologies, in particular Next Generation Sequencing (NGS) platforms. It consists of a comprehensive suite of infrastructure tools focused on ... [More] enabling the end-to-end analysis of sequence data – from from raw base calling to analyzed variants ready for interpretation by users. [Less]

150K lines of code

0 current contributors

over 6 years since last commit

1 users on Open Hub

Inactive
0.0
 
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SeqWare Public Workflows

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  Analyzed about 16 hours ago

A place to collaborate on public SeqWare workflows

10.5K lines of code

0 current contributors

over 9 years since last commit

1 users on Open Hub

Inactive
0.0
 
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