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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 20, 2025 — Jan 20, 2026 Showing page 125 of 136 Search / Filter on:
temp (?) hack to silence stdout output for system run method	sb10	More...				over 16 years ago
turned debugging output off	sb10	More...				over 16 years ago
added ssaha2() method; reimplmented do_mapping to use it	sb10	More...				over 16 years ago
moved AssemblyTools::hash_ssaha_cigar_output to VertRes::Utils::Cigar->cigar_by_reads()	sb10	More...				over 16 years ago
moved all the ssaha cigar-related code from SamTools.pm to VertRes::Utils::Cigar	sb10	More...				over 16 years ago
test script for the ssaha2 wrapper	sb10	More...				over 16 years ago
moved filter_cigar_stream_top10() to VertRes::Utils::Cigar; added ssaha2Build(); improved do_mapping() to use VertRes::Utils::Cigar etc.	sb10	More...				over 16 years ago
removed extraneous line	sb10	More...				over 16 years ago
new Cigar Util module	sb10	More...				over 16 years ago
[no comment]	pd3	More...				over 16 years ago
added local_cache option to do_mapping args	sb10	More...				over 16 years ago
allow mappers to not have all mapping args	sb10	More...				over 16 years ago
use picard for merging so we works with just 1 sam; check for the ssaha ref index; indirect the insert size	sb10	More...				over 16 years ago
new safe copy() method	sb10	More...				over 16 years ago
new Seq Utils module	sb10	More...				over 16 years ago
trivial change to improve cross-platform compatability	sb10	More...				over 16 years ago
[no comment]	tk2	More...				over 16 years ago
adding little utility that pretty-prints directory structures	sb10	More...				over 16 years ago
new Hierarchy Utils module	sb10	More...				over 16 years ago
parse_fofn now ignore comment lines	sb10	More...				over 16 years ago
broke main code of run() out into _run() so that it could be used without doing an automatic _post_run()	sb10	More...				over 16 years ago
test for merge_and_check	sb10	More...				over 16 years ago
set run_status correctly	sb10	More...				over 16 years ago
added merge_and_check(); fixed MarkDuplicates	sb10	More...				over 16 years ago
merge now uses merge_and_check	sb10	More...				over 16 years ago
added parse_fofn() method	sb10	More...				over 16 years ago
[no comment]	tk2	More...				over 16 years ago
added new merge() method	sb10	More...				over 16 years ago
added trivial explanatory comment	sb10	More...				over 16 years ago
trival TODO comment	sb10	More...				over 16 years ago

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