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Analyzed about 2 hours ago. based on code collected about 2 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 12, 2025 — Feb 12, 2026 Showing page 120 of 136 Search / Filter on:
[no comment]	tk2	More...				over 16 years ago
[no comment]	tk2	More...				over 16 years ago
[no comment]	tk2	More...				over 16 years ago
[no comment]	tk2	More...				over 16 years ago
[no comment]	tk2	More...				over 16 years ago
[no comment]	tk2	More...				over 16 years ago
[no comment]	tk2	More...				over 16 years ago
[no comment]	pd3	More...				over 16 years ago
[no comment]	pd3	More...				over 16 years ago
since filterCigarStreamTop10.pl is not executable, explicitly run it via perl	sb10	More...				over 16 years ago
updated hard-coded location of filterCigarStreamTop10.pl	sb10	More...				over 16 years ago
[no comment]	pd3	More...				over 16 years ago
corrected path to dict files	sb10	More...				over 16 years ago
since it relies on a dir only on sf2, it must be run there where scratch103 is not accessible, so ref dir must be hardcoded to /nfs/sf8	sb10	More...				over 16 years ago
update to samtools 0.1.6 with critical bug fixes	sb10	More...				over 16 years ago
reimplemented all the is_[flag] methods in inline c for improved speed	sb10	More...				over 16 years ago
updated hard paths to use env vars	sb10	More...				over 16 years ago
changed name of RecalQual.pm to GATK.pm to reflect that it now wraps the GenomeAnalysisToolKit	sb10	More...				over 16 years ago
reimplemented qual_to_ints as inline C for further 3x speed improvement	sb10	More...				over 16 years ago
changed name of RecalQual.pm to GATK.pm to reflect that it now wraps the GenomeAnalysisToolKit	sb10	More...				over 16 years ago
DCC file name format fixed	sb10	More...				over 16 years ago
further stubify - does nothing now until the module is completely rewritten	sb10	More...				over 16 years ago
updated file to have md5 as generated by latest samtools	sb10	More...				over 16 years ago
fixed silly copy/paste bug	sb10	More...				over 16 years ago
25% speed improvement to qual_to_ints(); test out to quality 93	sb10	More...				over 16 years ago
corrected date-containing test so that it works on any day	sb10	More...				over 16 years ago
new fix_simple_swaps() method; improved warnings in check_lanes_vs_sequence_index()	sb10	More...				over 16 years ago
speed up for bam_statistics() by reimplementing to use faster sam parsing method and array refs instead of hash refs	sb10	More...				over 16 years ago
new faster sam parsing method	sb10	More...				over 16 years ago
added perl profile -> html program	sb10	More...				over 16 years ago

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