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spades: genome assembler

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Analyzed about 14 hours ago. based on code collected about 14 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Oct 13, 2024 — Oct 13, 2025 Showing page 8 of 402 Search / Filter on:
this->graph() to g	Dima	More...				over 7 years ago
self-conj remover can be disabled via config	Sergey Nurk	More...				over 7 years ago
polisher-loop_traversal swapped	Dmitry Antipov	More...				over 7 years ago
fix for empty map entering in paired info removal	Dmitry Antipov	More...				over 7 years ago
Accurate self-conjugate edge disruption	Dima	More...				over 7 years ago
Fix of full contigs propagation	Yuri Gorshkov	More...				over 7 years ago
Disable series_analysis to use alternative profilers in reassembly	Yuri Gorshkov	More...				over 7 years ago
MTS-148: Add profiles computation based on per assembly read mapping	Yuri Gorshkov	More...				over 7 years ago
bugfix, many thanks to AntonK	Sergey Nurk	More...				over 7 years ago
More&better MTS stats	Yuri Gorshkov	More...				over 7 years ago
MTS-147: Modify choose_samples strategy	Yuri Gorshkov	More...				over 7 years ago
Dryrun option for mts.py (highly useful for testing)	Yuri Gorshkov	More...				over 7 years ago
reduced code duplication	Sergey Nurk	More...				over 7 years ago
functors instead of std::function in hotspot	Sergey Nurk	More...				over 7 years ago
compilation fix	Sergey Nurk	More...				over 7 years ago
Clarify local CQFs	Anton Korobeynikov	More...				over 7 years ago
CovFilteringWraps updated + hasher passed explicitly everywhere + minor refactoring	Sergey Nurk	More...				over 7 years ago
tests fix	Sergey Nurk	More...				over 7 years ago
VERIFY_DEV stub + rolling hash cleanup + namespace + cosmetics	Sergey Nurk	More...				over 7 years ago
nucl.hpp simplified and fore functional	Sergey Nurk	More...				over 7 years ago
Silence a warning	Anton Korobeynikov	More...				over 7 years ago
Factor out HLL & CQF with hasher	Anton Korobeynikov	More...				over 7 years ago
Fix return type	Anton Korobeynikov	More...				over 7 years ago
Cleanup	Anton Korobeynikov	More...				over 7 years ago
Return utility method	Anton Korobeynikov	More...				over 7 years ago
Remove dead code	Anton Korobeynikov	More...				over 7 years ago
Reduce code duplication	Anton Korobeynikov	More...				over 7 years ago
Cleanup	Anton Korobeynikov	More...				over 7 years ago
Remove misleading typedef	Anton Korobeynikov	More...				over 7 years ago
Introduce verify for initiailized index	Anton Korobeynikov	More...				over 7 years ago

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