Open Hub
Open Hub

 Settings |  Report Duplicate

1
I Use This!
Inactive

Commits : Listings

Analyzed about 13 hours ago. based on code collected about 13 hours ago.
Aug 05, 2025 — Aug 05, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Minor fixes and exposing serialization to users per suggestion.
Denis Yuen
More... about 14 years ago
Merge pull request #2 from SeqWare/lazyFeatureSet
Denis Yuen
More... about 14 years ago
Additional tests and bugfixes for lazy Feature Sets
Denis Yuen
More... about 14 years ago
Revert defaults
Denis Yuen
More... about 14 years ago
reverting local testing
Denis Yuen
More... about 14 years ago
Merge branch 'lazyFeatureSet' of github.com:SeqWare/seqware into lazyFeatureSet
Denis Yuen
More... about 14 years ago
Working versioning passing the versioning tests for lazy atureSets.
Denis Yuen
More... about 14 years ago
Implemented 'ByRange' plugin plus unit test.
Joachim Baran
More... about 14 years ago
Fixed PUT to indicate that it's an update and not a post.
Tony DeBat
More... about 14 years ago
Added File and File Attribute documentation. The 'header' function can be used for request headers as well.
Tony DeBat
More... about 14 years ago
Changing name of 'id' to 'seqid' in Feature.
Denis Yuen
More... about 14 years ago
Working version of versioning for laxy featuresets.
Denis Yuen
as mucus
More... about 14 years ago
Some simplifications and refactoring in advance of versioning.
Denis Yuen
as mucus
More... about 14 years ago
Merge branch 'lazyFeatureSet' of github.com:SeqWare/seqware into lazyFeatureSet
Denis Yuen
More... about 14 years ago
Dependencies for biojava and forester now in our local repo, adding some code so that the in-memory and file prototypes can also be used to test "lazy" FeatureSets. All tests working finally.
Denis Yuen
More... about 14 years ago
Added generic benchmarking method in QueryInterfaceTest. Added chromosomal/scaffold/etc parameter to getFeaturesByRange.
Joachim Baran
More... about 14 years ago
Pulled out benchmarking options into a separate interface. Reading values from "-D" parameters.
Joachim Baran
More... about 14 years ago
Partially working lazy feature sets.
Denis Yuen
More... about 14 years ago
Expanding documentation to reflect code-review.
Denis Yuen
More... about 14 years ago
Completing the test documentation with additional information.
Denis Yuen
More... about 14 years ago
These should allow the command-line tools to run from a self-contained jar file in the seqware-distribution/target directory
Denis Yuen
More... about 14 years ago
Splitting up Feature storage tables by Reference as well as a few tutorials for MapReduce.
Denis Yuen
More... about 14 years ago
Tests to demonstrate use of the import and export tools
Denis Yuen
More... about 14 years ago
Working ability to close a Storage type to clear memory and close HTables (recommended practice on the HBase API). Also, getting some idea about our data sizes
Denis Yuen
More... about 14 years ago
Working VCF Exporter along with a few optimizations for the HBase backend. Specifically, I've converted an iterator to pull back all SGIDs, but only to deserialize them on demand. This is a necessity when working off of a real dataset.
Denis Yuen
More... about 14 years ago
Tools for VCF and GFF3 importing, both working.
Denis Yuen
More... about 14 years ago
Merging the two plugin interfaces (and associated temporary code using them).
Denis Yuen
More... about 14 years ago
Fixed up a test to use the new Query attributes interface (cool!) tests or somehow survived a refactor.
Denis Yuen
More... about 14 years ago
Porting over the old GFF3 and VCF importers to the prototype. Looks like we might need fast access to specific tags in AtomImpl. Also, the prototype has a few more fields than we do. Although we can support them as tags (or additionalFields), this will be a significant increase in size.
Denis Yuen
More... about 14 years ago
RPN implementation of a query constraint evaluation engine.
Joachim Baran
More... about 14 years ago