SeqWare Queryengine

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Analyzed about 4 hours ago. based on code collected about 17 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 21, 2025 — Aug 21, 2026 Showing page 64 of 71 Search / Filter on:
Changeable batch-size	Denis Yuen	More...				about 14 years ago
Super efficient querying of tags that are part of a tree-like structure, such as the terms of the Sequence Ontology. Actual matching is done via tag-key prefix matching.	Joachim Baran	More...				about 14 years ago
Update README.md	Denis Yuen	More...				about 14 years ago
Merge branch 'master' of github.com:SeqWare/seqware	Joachim Baran	More...				about 14 years ago
Proof-of-concept of a tag query method that permits to search within an ontology hierarchy (e.g., return all features that are tagged with term "x" or children of "x").	Joachim Baran	More...				about 14 years ago
Refactoring TagSpecSet to TagSet, updates to command-line tools including a SO loader and a Feature loader aware of SO.	Denis Yuen	More...				about 14 years ago
Performance fix.	Denis Yuen as mucus	More...				about 14 years ago
Adding tools for loading SO, loading Features annotated with SO, and creating empty tagsets and references.	Denis Yuen	More...				about 14 years ago
Fixes for VCF loading, error codes, and missing values with tests.	Denis Yuen	More...				about 14 years ago
Added query support for finding features based on their tags and tags' values.	Joachim Baran	More...				about 14 years ago
Added query support for finding features based on their tags and tags' values.	Joachim Baran	More...				about 14 years ago
Added possibility to set query constraints on the presence/absence of a tag (by name). Example implemented in QueryInterfaceTest.	Joachim Baran	More...				about 14 years ago
Fixing up some log4j interaction and parameters to FeatureImporter.	Denis Yuen	More...				about 14 years ago
Merge branch 'master' of github.com:SeqWare/seqware	Denis Yuen	More...				about 14 years ago
Cleaning up the M/R plugins as well in a parallel fashion.	Denis Yuen	More...				about 14 years ago
RPNStack extended to take various types of parameters. The actual parameters can then be populated by plugins based on type (i.e., by Java class).	Joachim Baran	More...				about 14 years ago
Merge branch 'master' of github.com:SeqWare/seqware	Denis Yuen	More...				about 14 years ago
Refactoring and cleaning up In-memory plugins to allow for easier tag language implementation.	Denis Yuen	More...				about 14 years ago
Added 'queryengine' to package paths, so that tests compile again.	Joachim Baran	More...				about 14 years ago
Cleaning up logging messages to log4j, adding properties, and adding Hackathon demo app.	Denis Yuen	More...				about 14 years ago
Added ability to start arbitrary plugins (perhaps loaded from an external jar file)	Denis Yuen	More...				about 14 years ago
Wrapping up the dependency check.	Denis Yuen	More...				about 14 years ago
Debugging for map/reduce jobs on the cluster. Make sure to change your namespace and build path in the Constants file when working on the cluster.	Denis Yuen	More...				about 14 years ago
Implemented first passes at the overlap, tag, and attributes queries using M/R.	Denis Yuen	More...				about 14 years ago
Refactored plugins, some tests had the wrong package.	Denis Yuen	More...				about 14 years ago
Refactoring in-memory plugins as model for M/R plugins.	Denis Yuen	More...				about 14 years ago
Working M/R implementation for a "get all features and put them in a new feature set" plugin.	Denis Yuen	More...				about 14 years ago
pom changes and moving tests in order to allow compilation to jar and running on the clusters.	Denis Yuen	More...				about 14 years ago
Added a new model mode where we try to use map reduce.	Denis Yuen	More...				about 14 years ago
Working with a lazyFeatureSet aware plugin	Denis Yuen	More...				about 14 years ago

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