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Analyzed over 1 year ago. based on code collected over 1 year ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 13, 2023 — Feb 13, 2024 Showing page 26 of 558 Search / Filter on:
JAL-629 Don't use new ArgParser if there are no --args and some -args	Ben Soares	More...				about 2 years ago
JAL-629 fix SubVals npe	Ben Soares	More...				about 2 years ago
JAL-629 extensive tests for ArgParser features	Ben Soares	More...				about 2 years ago
JAL-629 Added --opennew --nonews --nosplash. Added java globbing for = e.g. --open=*/.fa. General debugging of argparser features for tests	Ben Soares	More...				about 2 years ago
JAL-629 Opening files in new windows. not working yet	Ben Soares	More...				about 2 years ago
JAL-629 open initial non-Arg arguments as files in separate alignment frames	Ben Soares	More...				about 2 years ago
JAL-629 improvements to argparser toString. Improvements to cli paeFile structure selection. Allow label subval for paefile	Ben Soares	More...				about 2 years ago
Merge branch 'develop' into features/JAL-4134_treeviewerforcolumns	James Procter	More...				about 2 years ago
JAL-4134 - store colours in annotation row, so colour by annotation can be used to shade sequence or alignment by PAE groups. Not working - see comments	James Procter	More...				about 2 years ago
JAL-4158 first attempt at stashing colours for contact matrix groups and allowing them to be overlayed on the contact matrix visual. NEEDS TESTS!	James Procter	More...				about 2 years ago
Merge branch 'develop' into features/r2_11_2_alphafold/JAL-629	Ben Soares	More...				about 2 years ago
JAL-629 Test tidyup	Ben Soares	More...				about 2 years ago
Merge branch 'patch/JAL-4153_flakyJvCacheableInputBoxTest' into develop	James Procter	More...				about 2 years ago
JAL-629 don't clear appProps in tests	Ben Soares	More...				about 2 years ago
JAL-629 refactor ArgParser and helper classes all to jalview.bin.argparser to remove static classes. Clear properties after tests.	Ben Soares	More...				about 2 years ago
JAL-629 null checks for Desktop.instance.closeAll(). Props re-loaded after CommandsTest.	Ben Soares	More...				about 2 years ago
JAL-4134 override default hasTree so PAE tree is saved!	James Procter	More...				about 2 years ago
JAL-4153 longer Thread.sleep() calls in the hope that the test might pass on Bamboo	James Procter	More...				about 2 years ago
JAL-4134 - missing Jalview project JAXB class - st. patricks day commit curse	James Procter	More...				about 2 years ago
Merge branch 'develop' into features/JAL-4134_treeviewerforcolumns	James Procter	More...				about 2 years ago
JAL-4150 test and quick patch copying code from AlignFrame.paste() to Desktop.paste() so internal paste works from popup menu	James Procter	More...				about 2 years ago
JAL-2349 JAL-4134 Console log messages for contact matrix selection	James Procter	More...				about 2 years ago
JAL-4134 propagate column selection changes in tree and alignment views	James Procter	More...				about 2 years ago
JAL-4134 fix off-by-one in selection	James Procter	More...				about 2 years ago
JAL-4134 fix NPEs when matrix not resolved or alignment view is closed	James Procter	More...				about 2 years ago
JAL-4134 better popup menu name ‘Tree for Contact Matrix’	James Procter	More...				about 2 years ago
JAL-2349 test TODOs	James Procter	More...				about 2 years ago
JAL-2349 fix off by one when resolving columns for sequence associated contact matrix	James Procter	More...				about 2 years ago
JAL-629 restore original tests memory settings	Ben Soares	More...				about 2 years ago
JAL-629 restore original tests memory settings	Ben Soares	More...				about 2 years ago

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