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Analyzed over 1 year ago. based on code collected over 1 year ago.
Feb 13, 2023 — Feb 13, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Merge branch 'develop' into features/r2_11_2_alphafold/JAL-629
Ben Soares
More... over 1 year ago
JAL-4124 comment out incomplete test bits.. for now
James Procter
More... over 1 year ago
JAL-4124 MappableContactMatrix equivalence and hashCode ensuring non-redundant set of MappablePAE matrices are held on each dataset sequence
James Procter
More... over 1 year ago
JAL-4124 Dataset holds list of MatrixType instances, MapOnAMatrixType allows multiple instances of a MatrixType to be specified across alignment views
James Procter
More... over 1 year ago
JAL-4124 decouple mappable contact matrix mapping logic from underlying contact matrix data so one matrix+tree+clustering can be referenced multiple times
James Procter
More... over 1 year ago
Merge branch 'bug/JAL-4255_slf4j_missing_StaticLoggerBinder_error_message' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... over 1 year ago
JAL-4255 better grammar
Ben Soares
More... over 1 year ago
JAL-4255 Updated THIRDPARTYLIBS
Ben Soares
More... over 1 year ago
Merge branch 'bug/JAL-4255_slf4j_missing_StaticLoggerBinder_error_message' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... over 1 year ago
JAL-4255 Added slf4j-nop jar and upgraded to last 1.x release
Ben Soares
More... over 1 year ago
Merge branch 'develop' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... over 1 year ago
Merge branch 'develop' into more_efficient_PAE
James Procter
More... almost 2 years ago
JAL-4090 JAL-4250 JAL-4253 JAL-325 release notes and THIRDPARTYLIB
James Procter
More... almost 2 years ago
Merge branch 'improvement/JAL-4250_secondary_structure_annotation_antialias' into develop
James Procter
More... almost 2 years ago
JAL-4253 drop the bottom line so it lines up with the vertical of group border.
James Procter
More... almost 2 years ago
Merge branch 'develop' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... almost 2 years ago
Merge branch 'features/r2_11_2_alphafold/JAL-629' into develop
Ben Soares
More... almost 2 years ago
JAL-629 Avoid hidden options dialog when saving in headless mode
Ben Soares
More... almost 2 years ago
Merge branch 'bug/JAL-4214_system_freeze_when_opening_file_using_gui_in_linux' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... almost 2 years ago
Merge branch 'improvement/JAL-4250_secondary_structure_annotation_antialias' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... almost 2 years ago
JAL-4250 Fix bug in vector rendition where more than one secondary structure loses the glyphline.
Ben Soares
More... almost 2 years ago
Merge branch 'improvement/JAL-4250_secondary_structure_annotation_antialias' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... almost 2 years ago
JAL-4250 Much simplified glyph creation removing most need for differences between vector/bitmap generation. Careful testing done to ensure no gaps in vector or high or low res bitmap.
Ben Soares
More... almost 2 years ago
Merge branch 'improvement/JAL-4250_secondary_structure_annotation_antialias' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... almost 2 years ago
JAL-4250 Fix one word bug for 'af.createEPS(file, renderer)' (was af.createEPS(file, name)'. Everything else is formatting changes.
Ben Soares
More... almost 2 years ago
Merge branch 'improvement/JAL-4250_secondary_structure_annotation_antialias' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... almost 2 years ago
JAL-4250 Updated jfreesvg to fix round stroke in linegraph.
Ben Soares
More... almost 2 years ago
Merge branch 'improvement/JAL-4250_secondary_structure_annotation_antialias' into merge/big_merge_of_bens_stuff_before_2_11_3_0
Ben Soares
More... almost 2 years ago
JAL-4250 Simplification of polygons and adjustments to calculations in secondary structure for vector rendition. Corrected rounding error for line graph with round stroke to give joined up appearance in vector rendition.
Ben Soares
More... almost 2 years ago
JAL-4062 a few more tests to check append honours distinct sequences and doesn't miscount results when it edits the list
James Procter
More... almost 2 years ago