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I Use This!
Moderate Activity

Commits : Listings

Analyzed 11 days ago. based on code collected 11 days ago.
May 30, 2023 — May 30, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Invalid read fix in hts_itr_query; Unsafe loop limits fix in vcf_parse1 More... almost 12 years ago
Synced reader can collapse sites by variant type; new API call set_variant_types More... almost 12 years ago
Collect Ts/Tv by AF More... almost 12 years ago
Functional implementation of synced reader including allele checking More... almost 12 years ago
Fill sequence dictionary from tabix index if contigs not present in VCF header. Synced reader basically working. (No alleles detection yet.) More... almost 12 years ago
Experimental implementation of vcfcheck (non-functional) More... almost 12 years ago
API to test if a record is a SNP More... almost 12 years ago
bugfix: vcfview -G failing due to recent changes More... almost 12 years ago
compatible with tabix index More... almost 12 years ago
vcf<->bcf is pretty mature now More... almost 12 years ago
better help More... almost 12 years ago
abreak is working! More... almost 12 years ago
migrate sam2break.d to htslib More... almost 12 years ago
added a little doc More... almost 12 years ago
changed function names More... almost 12 years ago
make bcf_unpack() more flexible More... almost 12 years ago
a little bit code simplification More... almost 12 years ago
bugfix: a typo More... almost 12 years ago
removed old vcf_format1() code More... almost 12 years ago
generating vcf from bcf_dec_t; to remove old code More... almost 12 years ago
Merge pull request #2 from arq5x/master More... almost 12 years ago
declare bcf_unpack in the header More... almost 12 years ago
nothing More... almost 12 years ago
unpack bcf1_t; NOT WORKING yet More... almost 12 years ago
declare bcf_fmt_sized_array() in the header More... almost 12 years ago
halve HTS_MIN_MARKER_DIST; updated doc More... almost 12 years ago
handle unmapped aln in SAM More... almost 12 years ago
bugfix: update_loff() run twice More... almost 12 years ago
using -O2 More... almost 12 years ago
bugfix More... almost 12 years ago