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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Jun 07, 2024 — Jun 07, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Update to next SNAPSHOT version.
Brian Searle
More... over 2 years ago
Update to version for release encyclopedia-2.0.0-RC1.
Brian Searle
More... over 2 years ago
fixed ordering issue in window downsampler
Brian Searle
More... over 2 years ago
Add additional assertion that we decode the right quant ions.
Seth Just
More... over 2 years ago
Update to next SNAPSHOT version.
Brian Searle
More... over 2 years ago
Update to version for release encyclopedia-2.0.0-RC1.
Brian Searle
More... over 2 years ago
Address NPE.
Seth Just
More... over 2 years ago
sample-specific scores for quant are preferred based on RT alignment
Brian Searle
More... over 2 years ago
Reuse entries from the original search library in alignment-only results.
Seth Just
More... over 2 years ago
Tighten assertions around entries in the alignment-only library.
Seth Just
More... over 2 years ago
Merged searleb/encyclopedia into master
Caleb Emmons
More... over 2 years ago
fixes to test code
Brian Searle
More... over 2 years ago
Merge branch 'master' of bitbucket.org:searleb/encyclopedia
Brian Searle
More... over 2 years ago
fixed match-between-runs quant with Scribe
Brian Searle
More... over 2 years ago
Merge branch 'master' of bitbucket.org:searleb/encyclopedia
Brian Searle
More... over 2 years ago
new test for library similarity
Brian Searle
More... over 2 years ago
added xml icon
Brian Searle
More... over 2 years ago
major refactor to allow for more complicated filtering between Percolator runs, implemented mass accuracy filter for Scribe
Brian Searle
More... over 2 years ago
Ensure we don't sort points with identical X out-of-order and trigger our non-strict monotonicity check.
Seth Just
More... over 2 years ago
added batch help text
Brian Searle
More... over 2 years ago
Fix typo in query.
Seth Just
More... over 2 years ago
updated changelog
Brian Searle
More... over 2 years ago
added XML jobs for quantifying and combining results
Brian Searle
More... over 2 years ago
Update javadoc.
Seth Just
More... over 2 years ago
Remove out-of-date TODOs.
Seth Just
More... over 2 years ago
Fix broken normalization by recording each job's TIC in the alignment results ELIB.
Seth Just
More... over 2 years ago
Work towards recording TIC in alignment-only ELIB.
Seth Just
More... almost 3 years ago
Patch integration test files to ensure TIC normalization functions as intended.
Seth Just
More... almost 3 years ago
Start working towards normalization when using quant-only workflow. Add logging to help diagnose no-normalization issues.
Seth Just
More... almost 3 years ago
Switch to existing (correct) impl of reading proteins.
Seth Just
More... almost 3 years ago