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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 15, 2025 — Feb 15, 2026 Showing page 17 of 48 Search / Filter on:
refactor: Collapse protein IDs to avoid duplicating feature data in DataFrames	singjc	More...				9 months ago
refactor: Add 'PROTEIN_ID' column handling for 'ms1', 'ms2', and 'ms1ms2' levels in parquet scoring	singjc	More...				9 months ago
refactor: Enhance logging and diagnostics for row mismatch in score DataFrame	singjc	More...				9 months ago
refactor: Update CLI option descriptions and variable names for consistency and clarity	singjc	More...				9 months ago
refactor: Update file paths in read_parquet method for consistency	singjc	More...				9 months ago
refactor: imports	singjc	More...				9 months ago
refactor: Improve CLI option descriptions for better clarity and understanding	singjc	More...				9 months ago
chore: Check for and log duplicate entries in score DataFrame on join column	singjc	More...				9 months ago
refactor: Update CLI module paths for improved organization	singjc	More...				9 months ago
refactor: Improve readability and documentation in scoring classes	singjc	More...				9 months ago
lint: cli	singjc	More...				9 months ago
lint: apply ruff formatting	singjc	More...				9 months ago
lint: format with ruff	singjc	More...				9 months ago
lint: apply ruff formatting	singjc	More...				9 months ago
feat: Install seaborn and psutil dependencies in Dockerfile	singjc	More...				9 months ago
refactor: Update module paths for optimized C files	singjc	More...				9 months ago
add: init to glyco module	singjc	More...				9 months ago
feat: Add method to merge precursor and transition features files into single parquet files	singjc	More...				9 months ago
update: optimized c	singjc	More...				9 months ago
refactor: Remove unused format_bytes function for better code cleanliness	singjc	More...				9 months ago
refactor: Add measure_memory_usage_and_time decorator to score function	singjc	More...				9 months ago
add: report for post scored OSW-PYP results	singjc	More...				9 months ago
feat: Add export_scored_report function to export PyProphet scored reports	singjc	More...				9 months ago
refactor: Add export_scored_report command and measure memory usage and time for various export functions	singjc	More...				9 months ago
feat: Add new commands for glycopeptide, gene, and protein in levels context	singjc	More...				9 months ago
refactor: separate out subcommands into separate files in cli module to clean up main	singjc	More...				9 months ago
refactor: Update Base classes to use BaseOSWReader and BaseOSWWriter for consistency across modules	singjc	More...				9 months ago
refactor: Update dependencies in pyproject.toml, optimize imports, and restructure code in various modules	singjc	More...				9 months ago
refactor: Update logging functionality to include header information for PyProphet CLI commands	singjc	More...				9 months ago
refactor: Update SVMLearner class to include class_weight parameter for hyperparameter tuning	singjc	More...				9 months ago

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