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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Feb 05, 2025 — Feb 05, 2026 Showing page 2 of 48 Search / Filter on:
Move ALIGNMENT_INTEGRATION_WORKFLOW.md to docs/user_guide	copilot-swe-agent[bot]	More...				2 months ago
Initial plan	copilot-swe-agent[bot]	More...				2 months ago
Update ALIGNMENT_INTEGRATION_WORKFLOW.md	Justin Sing	More...				2 months ago
Bump version from 3.0.4 to 3.0.5	Justin Sing	More...				2 months ago
Merge pull request #172 from PyProphet/dependabot/pip/pypdf-6.4.0	Justin Sing	More...				2 months ago
Merge pull request #173 from singjc/master	Justin Sing	More...				2 months ago
chore(deps): bump pypdf from 6.1.3 to 6.4.0	dependabot[bot]	More...				2 months ago
fix(report): ensure axes are consistently indexed in plot_score_distributions function	singjc	More...				3 months ago
feat(export): add support for exporting minimal scored-report columns from split Parquet files	singjc	More...				3 months ago
fix(osw): remove debug print statement for temporary table query in OSWWriter	singjc	More...				3 months ago
refactor(parquet): improve alignment group ID assignment and update score column references	singjc	More...				3 months ago
fix(tests): fix bug with restructuring of ipf score to precursor mapping and IM boundaries	singjc	More...				3 months ago
Add support for IM boundaries in OSWWriter: include EXP_IM_LEFTWIDTH and EXP_IM_RIGHTWIDTH columns	singjc	More...				3 months ago
Refactor OSWReader and OSWWriter to enhance peptide mapping and alignment handling; improve precision for ID columns and streamline SQL queries.	singjc	More...				3 months ago
Merge pull request #7 from singjc/copilot/fix-alignment-reference-id-issue	Justin Sing	More...				3 months ago
Update ALIGNMENT_INTEGRATION_WORKFLOW.md with precision fixes and group ID assignment	copilot-swe-agent[bot]	More...				3 months ago
Fix precision loss by adding CAST in SELECT clause (not JOIN)	copilot-swe-agent[bot]	More...				3 months ago
Fix performance regression: remove CAST from JOIN conditions	copilot-swe-agent[bot]	More...				3 months ago
Add comment clarifying SQLite INTEGER type equivalence	copilot-swe-agent[bot]	More...				3 months ago
Fix alignment reference feature ID precision and assign alignment_group_id to reference features	copilot-swe-agent[bot]	More...				3 months ago
Initial plan	copilot-swe-agent[bot]	More...				3 months ago
Merge pull request #1 from singjc/copilot/integrate-score-alignment-export	Justin Sing	More...				3 months ago
Merge branch 'master' into copilot/integrate-score-alignment-export	Justin Sing	More...				3 months ago
Update output files for pyprophet export tests to include new 'pep' column	singjc	More...				3 months ago
Add SCORE_MS2.PEP (MS2_PEAKGROUP_PEP) to standard OpenSWATH exports	copilot-swe-agent[bot]	More...				3 months ago
Add alignment info to all features, not just recovered ones	copilot-swe-agent[bot]	More...				3 months ago
Fix alignment_reference_feature_id displaying as scientific notation by converting to Int64	copilot-swe-agent[bot]	More...				3 months ago
Fix ambiguous ALIGNMENT_ID column error in OSW alignment query	copilot-swe-agent[bot]	More...				3 months ago
Add alignment_group_id to recovered alignment features	copilot-swe-agent[bot]	More...				3 months ago
Ensure reference features pass MS2 QVALUE threshold for alignment recovery	copilot-swe-agent[bot]	More...				3 months ago

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