Pierre Bellec

NIAK is a library of modules and pipelines for fMRI processing with Octave or Matlab(r) that can run in parallel either locally or in a supercomputing environment. Linux OS and MINC file format are supported. NIAK currently includes a T1 preprocessing pipeline, a pipeline for correction of ... [More] structured noise by component selection in ICA (CORSICA), as well as an fMRI preprocessing pipeline. NIAK features powerful pipeline management capabilities, including parallel computing, generation of detailed logs and automatic handling of pipeline failures or updates. [Less]

Pipeline system for Octave and MatlabPSOM is a tool to manage pipelines under Matlab or Octave, both within a single session or within a parallel computing environment. A pipeline is a collection of jobs, i.e. some matlab or octave code that uses files as inputs and produce files as outputs. PSOM is ... [More] automatizing all the boring tasks for you: Create folders for outputs Keep track of all options Generate log files Job failure will not crash the pipeline. The pipeline manager identifies the jobs that have failed to produce their expected outputs, and will be able to restart these failed jobs latter. If the pipeline is restarted while some jobs have been modified, the pipeline manager will restart only the jobs that these changes will impact. Determine which jobs can run in parallel by examin [Less]

Brainsprite.js turns a stack of brain slices into a 3D interactive viewer