DNT is a Development (Note) Tracker tool with a command line user interface. It is somewhat similar to devtodo with a plugin-oriented design.
It aims to ease the small/medium projects management tasks (bugs tracking, feature requests, notes etc) by keeping all the required information together
... [More] in the same project's source repository.
It has, as a side-effect, the ability to automatize the generation of BUGS, NEWS, TODOs etc. files. [Less]
Qtombo is a tree and multiple-file based note system inspired by tombo (for windows and PPC), written with Qt. Supports the encrypted notes of tombo. One note is one file, plain text if possible. Note tree is a directory tree.
Lucruri is a simple and easy to use todo list and note taking application. It will help you store and organize your thoughts, based on the "Getting things done" methodology.
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