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GROMACS
Analyzed about 6 hours ago
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded
Licenses:
lgpl21
wxMaxima
Analyzed about 2 hours ago
wxMaxima is a cross-platform graphical front-end for the computer algebra system Maxima based on wxWidgets. It provides nice display of mathematical output and easy access to Maxima functions through menus and dialogs.
Licenses:
No declared licenses
BibDesk
No analysis available
BibDesk is a graphical BibTeX-bibliography manager for Mac OS X. BibDesk is designed to help organize and use bibliographic databases in BibTeX .bib format. In addition to manual typing, BibDesk lets you drag & drop or cut & paste .bib files into the bibliographic database and automatically
Mostly written in language not available
Licenses:
bsd
SpeedCrunch
Analyzed 4 months ago
SpeedCrunch is a high-precision scientific calculator. It features a syntax-highlighted scrollable display and is designed to be fully used via keyboard. Some distinctive features are auto-completion of functions and variables, a formula book, and quick insertion of constants from various fields of
Mostly written in language not available
Licenses:
gpl
BioJava
Analyzed about 23 hours ago
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and
DUNE-project
Analyzed about 3 hours ago
DUNE, the Distributed and Unified Numerics Environment is a modular toolbox for solving partial differential equations (PDEs) with grid-based methods. It supports the easy implementation of methods like Finite Elements (FE), Finite Volumes (FV), and also Finite Differences (FD).
Biopython
Analyzed about 4 hours ago
Biopython is a set of freely available tools for biological computation written in Python by an international team of developers.
It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics. The source
Licenses:
Biopython...
votca
Analyzed 1 day ago
Versatile Object-oriented Toolkit for Coarse-graining Applications (VOTCA) is a package intended to reduce the amount of routine work when doing systematic coarse-graining of various systems. The core is written in C++. Iterative methods are implemented using bash + perl.
Licenses:
apache_2
Galaxy Bioinformatics Platform
No analysis available
Galaxy allows you to do analyses you cannot do anywhere else without the need to install or download anything. You can analyze multiple alignments, compare genomic annotations, profile metagenomic samples and much much more... We provide a public Galaxy instance at https://usegalaxy.org where you
Mostly written in language not available
Licenses:
AFL1-1
h5py
Analyzed about 14 hours ago
The h5py package is a Pythonic interface to the HDF5 binary data format.
It lets you store huge amounts of numerical data, and easily manipulate that data from NumPy. For example, you can slice into multi-terabyte datasets stored on disk, as if they were real NumPy arrays. Thousands of datasets
Licenses:
BSD-3-Clause