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Commits : Listings

Analyzed over 1 year ago. based on code collected over 1 year ago.
Jan 18, 2024 — Jan 18, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
if trust_beam_centre do not search other index origins; if reference_geometry then trust_beam_centre More... about 11 years ago
Clean HTML clutter More... about 11 years ago
Revert change which broke xia2html; FIXME need to remake this change with a corresponding change to xia2html More... about 11 years ago
use dials.check_indexing_symmetry to check for mis-indexing-by-1 More... about 11 years ago
use glm background algorithm by default More... about 11 years ago
update tests More... about 11 years ago
more specific phil parameter More... about 11 years ago
set min_local=0 in dials.find_spots More... about 11 years ago
fix tests More... about 11 years ago
Work in progress towards detecting completely blank images More... about 11 years ago
dmin -> d_min, patch courtsey of jmp85 More... over 11 years ago
Accept reason in reindex assignment More... over 11 years ago
#1 explain why setting reindex operation to aid debugging; #2 set *inverse* reindex operation (doh) More... over 11 years ago
support global_threshold=auto More... over 11 years ago
pass global_threshold parameter to dials.find_spots More... over 11 years ago
catch phil interpretation runtimeerror and re-raise as Sorry More... over 11 years ago
If unify_setting; do the reindexing to a common actual orientation matrix stuff; seems to work but also seems to not make the results any better :o( More... over 11 years ago
Removed previous attempt at reindexing to standard setting; to do this properly is ever so slightly more complicated More... over 11 years ago
A hill of commits working towards being able to unify crystal orientation matrices when data have been recorded with > 1 setting and crystal symmetry allows for ambiguity in the setting; also seems pointless with sparse data can make a mess of reindexing => allow old ccp4 reindex to be used; need to set unify_setting=true on the command line to get this behaviour to be triggered; asserted but not tested that the data are from a single sample etc... More... over 11 years ago
Code to generate masks from diffraction images by shadowed region; pass total counts & long list of images More... over 11 years ago
typo fix More... over 11 years ago
Changed syntax of is_similar_to: this is not tested? More... over 11 years ago
If modern aimless; set odd #terms as well as even More... over 11 years ago
If small molecule don't use 20 bins (messes things up) and don't by default include B factor correction in scaling More... over 11 years ago
Switch off SdB correction for small molecule work; remove ties; extend range for outlier rejection (makes sd refinement more stable) More... over 11 years ago
Use wider scale factor ranges for small molecule work More... over 11 years ago
Do not want to use this reindex at the moment, breaks M/ISYM flags More... over 11 years ago
Unwelcome emergent behaviour; now recording merged MTZ file More... over 11 years ago
If small molecule and no reindex op; reindex MTZ file using code from CCTBX in place of POINTLESS; works around issue with batches missing after reindex More... over 11 years ago
Small changes to manipulate data less if small molecule More... over 11 years ago