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Commits : Listings

Analyzed about 5 hours ago. based on code collected about 5 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jul 23, 2024 — Jul 23, 2025 Showing page 52 of 55 Search / Filter on:
mnp ts/tv and deamination bug	Erik Garrison	More...				almost 14 years ago
deamination ratio bug	Erik Garrison	More...				almost 14 years ago
sample removal utility	Erik Garrison	More...				almost 14 years ago
updates to vcfstats	Erik Garrison	More...				almost 14 years ago
renamed plots to reflect actual usage	Erik Garrison	More...				almost 14 years ago
fix sample intersection bug	Erik Garrison	More...				almost 14 years ago
Forgot Variant.h	Aaron Quinlan	More...				almost 14 years ago
Added vcf-allele-freq.cpp. Hack for Aaron's experiment.	Aaron Quinlan	More...				almost 14 years ago
Added getNumSamples() and getNumValidGenotypes()	Aaron Quinlan	More...				almost 14 years ago
Allow ./. genotypes as the only violator of sample's spec.	Aaron Quinlan	More...				almost 14 years ago
add vcfnumalt.cpp to repo	Erik Garrison	More...				almost 14 years ago
simplify vcfstats so that it works with complex VCF alleles	Erik Garrison	More...				almost 14 years ago
updated fastahack revision	Erik Garrison	More...				almost 14 years ago
vcfprimers - generate flanking sequence around variants in FASTA format	Erik Garrison	More...				about 14 years ago
don't output trailing tab in site-only VCF	Erik Garrison	More...				about 14 years ago
allow tagging for alleles in vcffilter	Erik Garrison	More...				about 14 years ago
update vcfstats to count all mismatches (mnps + snps)	Erik Garrison	More...				about 14 years ago
add vcfbiallelic, flattener; Variant.cpp fix	Erik Garrison	More...				about 14 years ago
allow filtering of individual alternate alleles (vcffilter)	Erik Garrison	More...				about 14 years ago
fix vcfstats to work with MNPs (again)	Erik Garrison	More...				about 14 years ago
vcf2tsv update for multi-allelic records	Erik Garrison	More...				about 14 years ago
updated multichoose	Erik Garrison	More...				about 14 years ago
re-add multichoose submodule	Erik Garrison	More...				about 14 years ago
bump	Erik Garrison	More...				about 14 years ago
bugfix and repository update to track submodule changes	Erik Garrison	More...				about 14 years ago
update to README to reflect submodules usage	Erik Garrison	More...				about 14 years ago
Merge github.com:ekg/vcflib	Erik Garrison	More...				about 14 years ago
vcfflatten - makes multi-allelic VCF records bi-allelic	Erik Garrison	More...				about 14 years ago
update vcfstats to deal with "complex" events	Erik Garrison	More...				about 14 years ago
ensure positional anchor when parsing VCF variants into alleles	Erik Garrison	More...				about 14 years ago

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