| Update README.md |
|
More...
|
almost 8 years ago
|
| Add files via upload |
|
More...
|
about 9 years ago
|
| produced recombination window plots |
|
More...
|
over 11 years ago
|
| refactored gene drawer into separate classes |
|
More...
|
over 11 years ago
|
| adding hyphy results |
|
More...
|
over 11 years ago
|
| adding code to draw genes with breakpoints |
|
More...
|
over 11 years ago
|
| added hyphy target |
|
More...
|
over 11 years ago
|
| input data and batch files are ready for GARD |
|
More...
|
over 11 years ago
|
| adding reformatted data and scripts for GARD analysis |
|
More...
|
over 11 years ago
|
| adding wrapper script to reformat previous batch of WUR data |
|
More...
|
over 11 years ago
|
| adding fasta files of genes with selected accessions (unaligned) |
|
More...
|
over 11 years ago
|
| adding fasta files containing genes of interested extracted for each accession separately. the list of genes is incomplete so we ignore these files. |
|
More...
|
over 11 years ago
|
| adding candidate gene results |
|
More...
|
over 12 years ago
|
| adding data re-formatter for splitstree |
|
More...
|
over 12 years ago
|
| added hyphy results to spreadsheet |
|
More...
|
over 12 years ago
|
| moving candidate gene files |
|
More...
|
over 12 years ago
|
| moving hyphy results |
|
More...
|
over 12 years ago
|
| adding hyphy results |
|
More...
|
over 12 years ago
|
| adding scripts and results for patristic distances |
|
More...
|
over 12 years ago
|
| adding newly assembled set of candidate genes |
|
More...
|
over 12 years ago
|
| driver script to reformat WUR data |
|
More...
|
over 12 years ago
|
| compares a locally computed protein translation with that curated by genbank |
|
More...
|
over 12 years ago
|
| splits a chromosome genome into a gene genome |
|
More...
|
over 12 years ago
|
| splices gene sequences into their constituent CDSs |
|
More...
|
over 12 years ago
|
| this identifies the gene IDs of the WUR sequences and groups them by ID instead of accession |
|
More...
|
over 12 years ago
|
| yet another protein-guided codon alignment program using exonerate |
|
More...
|
over 12 years ago
|
| adding a re-implementation of protein-guided codon alignment using exonerate |
|
More...
|
over 12 years ago
|
| adding separate shell script to do the mapping assembly |
|
More...
|
over 12 years ago
|
| now using axel to do the actual download instead of going through Net::FTP, which is slower |
|
More...
|
over 12 years ago
|
| this is a work in progress, commenting out the steps we're not automating right now |
|
More...
|
over 12 years ago
|
