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I Use This!
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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Aug 21, 2025 — Aug 21, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Move tutorial files out of provisioned-bundles directory.
Denis Yuen
More... over 13 years ago
Small chagne
Brian O'Connor
More... over 13 years ago
Final fixes for Brian's Tutorial
Denis Yuen
More... over 13 years ago
Modify maven archetype to generate bin directory, recursively set everything in it to be executable, and give a more explicit message when .seqware/settings permissions are incorrect.
Denis Yuen
More... over 13 years ago
Fix for ProvisionFiles, for using outputfile to override inputfile path
Denis Yuen
More... over 13 years ago
Fix to the ProvisionFiles step for Java
Denis Yuen
More... over 13 years ago
Updates to the user tutorial for a "clean" DB and some pathing issues fixed by unifying the directory structure.
Denis Yuen
More... over 13 years ago
SEQWARE-1595 : File permissions fix
Denis Yuen
More... over 13 years ago
Fixing WorkflowLauncherV2 to take into account parent-accessions from saved command-line options.
Denis Yuen
More... over 13 years ago
Adding some more logic to HelloWorld to take a specific output file
Brian O'Connor
More... over 13 years ago
Working on logic when a --input-file-metadata is used for single file copy
Brian O'Connor
More... over 13 years ago
Small bug fix, wrong method called
Brian O'Connor
More... over 13 years ago
Changed the order the object model's config values populated
Brian O'Connor
More... over 13 years ago
Correcting the lookup of ini file params
Brian O'Connor
More... over 13 years ago
Added a few conv methods to the Java workflow lang.
Brian O'Connor
More... over 13 years ago
Changes related to ensuring output_prefix and output_dir can be passed in as params to WorkflowLauncher or in the ini file. Added in code to provisionFiles that allows you to specify a particular output file. Added suppor to the workflow java API to allow for manually specifying output path.
Brian O'Connor
More... over 13 years ago
Finished testing the user tutorial. Found some issues with results reporting that will need to be debugged
Brian O'Connor
More... over 13 years ago
Working on moving the contents from the user tutorial to a specific portal tutorial
Brian O'Connor
More... over 13 years ago
Adding some new content to the docs
Brian O'Connor
More... over 13 years ago
Adding a new user guide for the portal and moving content from the main user guide here. Doing this so the main user guide uses only command line utilities.
Brian O'Connor
More... over 13 years ago
Working on docs
Brian O'Connor
More... over 13 years ago
Working on making the user guide more clear, moving portal docs to seperate guide.
Brian O'Connor
More... over 13 years ago
Removed 'isRoot' field from Sample; added in experiment accession for every Sample in BatchMetadataInjection; Added in null parents for samples.
Morgan Taschuk
More... over 13 years ago
Refinements to docs based on going through tutorials on the VM
Denis Yuen
More... over 13 years ago
Added line in DBAccess to remove the ThreadLocal after we're done with it; added Comparator to Sample so that we can add null parents; wrote POST test for SampleResource with null and not-null parent check; re-did the spacing in SampleIDResourceTest
Morgan Taschuk
More... over 13 years ago
Merge branch 'hotfix/0.13.6.5' of github.com:SeqWare/seqware into hotfix/0.13.6.5
Brian O'Connor
More... over 13 years ago
Just small tweaks
Brian O'Connor
More... over 13 years ago
Merge branch 'hotfix/0.13.6.5' of github.com:SeqWare/seqware into hotfix/0.13.6.5
Morgan Taschuk
More... over 13 years ago
fixed bugs. SEQWARE-1559. All parents of a sample mysteriously disappear because they were being cleared. SEQWARE-1577 AttributeAnnotator cascades deletes when annotating. fixed in all PUT methods. calling 'clear()' on the existing sample attributes was cascading the delete
Morgan Taschuk
More... over 13 years ago
Landing page from the VM
Denis Yuen
More... over 13 years ago