SeqWare Queryengine

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Analyzed about 16 hours ago. based on code collected about 17 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jul 30, 2025 — Jul 30, 2026 Showing page 3 of 71 Search / Filter on:
Looks like very basic readset read/write is working	Brian O'Connor	More...				over 12 years ago
Trying to get read set to work	Brian O'Connor	More...				over 12 years ago
Adding readset	Brian O'Connor	More...				almost 13 years ago
Merge pull request #8 from SeqWare/feature/naive_overlaps	Denis Yuen	More...				almost 13 years ago
Reactivate broken tests	Denis Yuen	More...				almost 13 years ago
fix typo	Denis Yuen	More...				almost 13 years ago
Include the inverse for more interest	Denis Yuen	More...				almost 13 years ago
wrong ID	Denis Yuen	More...				almost 13 years ago
Only suppress overlaps with yourself, not with SNV at the same position.	Denis Yuen	More...				almost 13 years ago
Remove repeats	Denis Yuen	More...				almost 13 years ago
A bolus of changes to allow for naive overlaps.	Denis Yuen	More...				almost 13 years ago
Initial implementation, some existing plugins may need to be updated.	Denis Yuen	More...				almost 13 years ago
Merge pull request #7 from SeqWare/feature/demo_simple	Denis Yuen	More...				almost 13 years ago
Add fix for empty RPNStacks created by unfiltered plugins	Denis Yuen	More...				almost 13 years ago
Simple version checks out, but we'll leave the old version around	Denis Yuen	More...				almost 13 years ago
Simplify one of Brian's plugins for presentation	Denis Yuen	More...				almost 13 years ago
Merge pull request #6 from SeqWare/feature/plugin_interface_refactor_2	Denis Yuen	More...				almost 13 years ago
Refactor to clearly delineate contributed plugins, recipes for new plugins, and core plugins used for the implementation of QE	Denis Yuen	More...				almost 13 years ago
Convert filtering into an interface	Denis Yuen	More...				almost 13 years ago
Further simplify example plugins and add documentation to interfaces.	Denis Yuen	More...				almost 13 years ago
Remove plugable serialization for plugin parameters (more trouble than worth), cleaned up InMemoryPluginRunner code to match.	Denis Yuen	More...				almost 13 years ago
Clean-up alternate aggregation demo	Denis Yuen	More...				almost 13 years ago
Merge branch 'develop' into feature/plugin_interface_refactor_2	Denis Yuen	More...				almost 13 years ago
Merge branch 'develop' into feature/plugin_interface_refactor_2	Denis Yuen	More...				almost 13 years ago
Re-add serializable text (we serialize the plugin as a whole)	Denis Yuen	More...				almost 13 years ago
Attempt to refactor and clean-up plug-in interface by reducing number of generics	Denis Yuen	More...				almost 13 years ago
Merge pull request #5 from SeqWare/feature/plugin_interface_refactor	Denis Yuen	More...				almost 13 years ago
Remove inherited documentation from seqware	Denis Yuen	More...				almost 13 years ago
Update query language documentation	Denis Yuen	More...				almost 13 years ago
Working prototype for launching filtered plugins from the command-line, testing with ICGC aggregation plugins	Denis Yuen	More...				almost 13 years ago

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