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Analyzed about 6 hours ago. based on code collected about 7 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Nov 29, 2024 — Nov 29, 2025 Showing page 93 of 94 Search / Filter on:
* samtools-0.1.2-23 * recognize '*' at the QUAL field	Heng Li	More...				over 16 years ago
* samtools-0.1.2-22 * the field separater is TAB only, now	Heng Li	More...				over 16 years ago
* fixed the problem in the example alignment due to the bug in fixmate	Heng Li	More...				over 16 years ago
* samtools-0.1.2-21 * fixed a nasty bug in `fixmate'	Heng Li	More...				over 16 years ago
make the script robust to the bugs in SOAP-2.1.7	Heng Li	More...				over 16 years ago
* samtools-0.1.2-20 * check if file is truncated in flagstat	Heng Li	More...				over 16 years ago
* samtools-0.1.2-19 * print the header if requested	Heng Li	More...				over 16 years ago
* samtools-0.1.2-18 * fixed a minor bug reported by Nils Homer	Heng Li	More...				over 16 years ago
rename Makefile.std as Makefile. GNU building systerm is not ready and may take some time...	Heng Li	More...				over 16 years ago
* samtools-0.1.2-17 * incorporating Nils' changes * rename Makefile to Makefile.std and prepare to add the GNU building systerms (also by Nils)	Heng Li	More...				over 16 years ago
* samtools-0.1.2-16 * made pileup take a list of proposed indels. An insertion is N at the moment. * added my kstring library for a bit complex parsing of the position list.	Heng Li	More...				over 16 years ago
* soap2sam.pl-0.1.2 * more robust to truncated soap output	Heng Li	More...				over 16 years ago
added bam_stat.o to Makefile.lite	Heng Li	More...				over 16 years ago
* samtools-0.1.2-15 * generate RMS of mapQ instead of max mapQ	Heng Li	More...				over 16 years ago
* samtools-0.1.2-14 * implemented GLFv3	Heng Li	More...				over 16 years ago
* samtools-0.1.2-13 * fixed a minor bug in displaying pileup	Heng Li	More...				over 16 years ago
* samtools-0.1.2-12 * optionally print SAM header	Heng Li	More...				over 16 years ago
* samtools-0.1.2-11 * use "GLF\3" as the magic for GLFv3 files	Heng Li	More...				over 16 years ago
* samtools-0.1.2-10 * fixed a bug in import: core.bin is undefined for unmapped reads * this bug can be alleviated (not completely solved) in bam_index.c * update to GLFv3: pos is changed to offset for better compression	Heng Li	More...				over 16 years ago
* wgsim-0.2.3 * fixed a bug in simulating indels	Heng Li	More...				over 16 years ago
* wgsim-0.2.2 * allow to print mismatch information as fastq comment. MAQ does not like long read names.	Heng Li	More...				almost 17 years ago
* wgsim-0.2.1 * fixed a bug about color read coordinates * fixed a bug in read names * wgsim_eval.pl-0.1.3 * make the script work with color reads	Heng Li	More...				almost 17 years ago
* wgsim: added a note	Heng Li	More...				almost 17 years ago
* wgsim-0.2.0 * considerable code clean up * print number of substitutions/indels/errors on each read * potentially support SOLiD simulation, though not tested at the moment * wgsim_eval.pl-0.1.2 * change in accordant with wgsim	Heng Li	More...				almost 17 years ago
* samtools-0.1.2-9 * fixed a bug in bam_fetch, caused by completely contained adjacent chunks	Heng Li	More...				almost 17 years ago
Fix annoying segv when invalid region specified.	On behalf of Bob Handsaker	More...				almost 17 years ago
* move indel_filter.pl to samtools.pl	Heng Li	More...				almost 17 years ago
* samtools-0.1.2-7 * fixed a bug in fixmate: SE reads are flagged as BAM_FMUNMAP	Heng Li	More...				almost 17 years ago
* samtools-0.1.2-7 * fixed a minor bug in flagstat	Heng Li	More...				almost 17 years ago
* samtools-0.1.2-6 * improve indel caller by setting maximum window size	Heng Li	More...				almost 17 years ago

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