1
I Use This!
Very Low Activity

Commits : Listings

Analyzed 35 minutes ago. based on code collected 35 minutes ago.
Feb 18, 2025 — Feb 18, 2026
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
start to make the plate potential a pure c++ potential More... over 11 years ago
the plate folder now seems to be working for tetrahedra More... over 11 years ago
basinhopping keeps track of function evaluations More... over 11 years ago
start to add a system class for folding plates into platonic solids More... over 11 years ago
New system class for OTP molecules with periodic boundary conditions. More... over 11 years ago
Added new c++ and python classes to measure distances in periodic boundary conditions during NEB runs. Added a mindist class for periodic rigid body systems (not yet complete). More... over 11 years ago
added get_maxstep to optimizer More... over 11 years ago
Merge pull request #86 from kjs73/hs_wca_interface More... over 11 years ago
fix typo More... over 11 years ago
Fixed some incorrect arguments and replaced some things with augmented assignment operators (+=, -=). More... over 11 years ago
Removed extra for statement, which resulted in the variable name i being used twice. More... over 11 years ago
Update _hs_wca_cpp.pyx More... over 11 years ago
fix integer type, adapt frozen particle example for consistency More... over 11 years ago
remove other hs_wca wrappings More... over 11 years ago
change comment scheme More... over 11 years ago
formatting More... over 11 years ago
fix None check of frozen atoms dof More... over 11 years ago
fix array declaration More... over 11 years ago
formatting More... over 11 years ago
move more wrapping More... over 11 years ago
move wrapping of radii More... over 11 years ago
move wrapping of frozen dof array, duplicate wrapping function for size_t More... over 11 years ago
move wrapping of reference coords More... over 11 years ago
use array_wrap_np for boxvector More... over 11 years ago
comparisions to None, formatting More... over 11 years ago
Merge remote-tracking branch 'origin/master' into hs_wca_interface More... over 11 years ago
added comment More... over 11 years ago
Updated amber.read_amber to read coordinates from inpcrd files into Molecule objects. Also added a new file for converting to and from internal coordinates. More... over 11 years ago
Added pint package to amber/measure.py for managing units. Not sure we want to add it to a list of dependencies yet. More... over 11 years ago
Changed Amber Atom comparison to use mass, name and then index. Previously just used index. More... over 11 years ago