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nmdp-bioinformatics-pipeline

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Analyzed 3 minutes ago. based on code collected 24 minutes ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Aug 13, 2024 — Aug 13, 2025 Showing page 6 of 7 Search / Filter on:
change builder access methods to withStart() and withEnd()	Senator Caleb Kennedy	More...				almost 11 years ago
Merge pull request #20 from mheuer-nmdp/style-fixes	Jeremy Anderson	More...				almost 11 years ago
update picard dependency to htsjdk version 1.118	Michael Heuer as Michael Heuer (NMDP)	More...				almost 11 years ago
Merge pull request #21 from janders3-nmdp/typo_fix	Mark Thorsen	More...				almost 11 years ago
one less 'reference'	Jeremy Anderson as andersje	More...				almost 11 years ago
adding license header, style fixes	Michael Heuer as Michael Heuer (NMDP)	More...				almost 11 years ago
Merge pull request #18 from janders3-nmdp/update_path_to_ngstools	Michael Heuer as Michael Heuer (NMDP)	More...				almost 11 years ago
necessary path fixes	Jeremy Anderson as andersje	More...				almost 11 years ago
Merge pull request #14 from ckennedy-nmdp/new-feature-branch	Jeremy Anderson	More...				almost 11 years ago
Merge pull request #16 from janders3-nmdp/tutorial_data_dir	Mark Thorsen	More...				almost 11 years ago
creation of prep_data_dir, dependant on presence of /opt/data/tutorial/fastq. fixes Issue #12	Jeremy Anderson	More...				almost 11 years ago
Merge pull request #15 from janders3-nmdp/fix_splitter_abort	Mark Thorsen	More...				almost 11 years ago
improving error message on TOOLDIR setting. Fixes issue #11	Jeremy Anderson	More...				almost 11 years ago
Add manual step to filter consensus sequences (eg whole-gene clonal target amplification) into subregions of research or clinical interest (eg HLA class I exons 2 and 3 representing the ARS)	Senator Caleb Kennedy	More...				almost 11 years ago
Merge pull request #13 from ckennedy-nmdp/new-feature-branch	Michael Heuer as Michael Heuer (NMDP)	More...				almost 11 years ago
Process unpaired (SRA) data	Senator Caleb Kennedy	More...				almost 11 years ago
Merge pull request #10 from mheuer-nmdp/license-headers	Jeremy Anderson	More...				almost 11 years ago
Merge pull request #8 from janders3-nmdp/script_improvements	Caleb Kennedy	More...				almost 11 years ago
Merge pull request #6 from janders3-nmdp/initial_script_checkin	Caleb Kennedy	More...				almost 11 years ago
bcfools != bcftools	Jeremy Anderson as andersje	More...				almost 11 years ago
better check for missing executables	Jeremy Anderson as andersje	More...				almost 11 years ago
much more error checking, stylistic consistency on variable calls, debug mode available in both scripts.	Jeremy Anderson as andersje	More...				almost 11 years ago
add proper license headers	Michael Heuer as Michael Heuer (NMDP)	More...				almost 11 years ago
Merge github.com:nmdp-bioinformatics/pipeline into initial_script_checkin	Jeremy Anderson	More...				almost 11 years ago
adding the actual scripts	Jeremy Anderson	More...				almost 11 years ago
Merge pull request #5 from janders3-nmdp/initial_script_checkin	Michael Heuer as Michael Heuer (NMDP)	More...				almost 11 years ago
cleaner formatting on readme.md	Jeremy Anderson	More...				almost 11 years ago
added splitter.bash, process_fastq.bash, based on SSAKE, updated README.md	Jeremy Anderson	More...				almost 11 years ago
added splitter.bash, process_fastq.bash, based on SSAKE, updated README.md	Jeremy Anderson	More...				almost 11 years ago
Merge pull request #4 from mheuer-nmdp/contrib-changes	Bob Milius	More...				almost 11 years ago

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