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Analyzed about 8 hours ago. based on code collected about 8 hours ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jul 31, 2024 — Jul 31, 2025 Showing page 2 of 351 Search / Filter on:
Add support for MacOS statify.	Brian P. Walenz	More...				8 months ago
Explicitly remove stray files in build/ during clean.	Brian P. Walenz	More...				8 months ago
fix invalid function name	Sergey Koren	More...				8 months ago
slurm reports mem in mb so account for that (#2346)	Sergey Koren	More...				10 months ago
update to allow per-contig trim setting in utgcns	Sergey Koren	More...				10 months ago
fix too low padding	Sergey Koren	More...				11 months ago
fail if mkfifo fails	Sergey Koren	More...				11 months ago
fix missing caExit include (issue #2334)	Sergey Koren	More...				12 months ago
minor fixes utgcns, properly handle skip bases in layouts	Sergey Koren	More...				about 1 year ago
fix confusion between lowqual vs skipcns flags, move constants to top of file	Sergey Koren	More...				about 1 year ago
Remove parens around return values, ;'s at end of methods.	Brian P. Walenz	More...				about 1 year ago
Return false for adjustFlipped() when the overlap is invalid; possible crash in sqStore_getReadLength(). Issue #2322.	Brian P. Walenz	More...				about 1 year ago
Return 0 instead of assert() for sqStore_getReadLength(0). Issue #2322.	Brian P. Walenz	More...				about 1 year ago
Only make one call to ssqStore_getReadLength().	Brian P. Walenz	More...				about 1 year ago
Fix a few issues detecting when coverage is too low (or zero). Issue #2320.	Brian P. Walenz	More...				about 1 year ago
Don't check haplotyping resources unless haplotyping is enabled. Issue #1911.	Brian P. Walenz	More...				about 1 year ago
Warn against using 'ovl' for correction; remove 'overlapper=' parameter alias. Issue 1924.	Brian P. Walenz	More...				about 1 year ago
Remove html_static_path entry since it doesn't exist.	Brian P. Walenz	More...				about 1 year ago
Fix 'title underline too short' and a few other warnings.	Brian P. Walenz	More...				about 1 year ago
Use more reliable slope-based histogram min detection in splitHaplotype. Issue #2189.	Brian P. Walenz	More...				about 1 year ago
don't split in the middle of a read for trio inputs	Sergey Koren	More...				about 1 year ago
Use the same perl interpreter for all jobs; find bin, perl and java paths consistently. Issue #2215.	Brian P. Walenz	More...				about 1 year ago
Fail early if more than 4095 input files are supplied. Issue #1910.	Brian P. Walenz	More...				about 1 year ago
Drop bogart memory requirements, especially for HiFi. Issue #1788.	Brian P. Walenz	More...				about 1 year ago
Create seqStore outside of correction/trimming stages so we can detect pre-corrected/pre-trimmed reads. Issue #1781.	Brian P. Walenz	More...				about 1 year ago
Remove logging about unsetting the grid TASK_ID environment variable.	Brian P. Walenz	More...				about 1 year ago
initialize tpos to appropriate value not 0	Sergey Koren	More...				about 1 year ago
Merge 'bamoutput' into master.	Brian P. Walenz	More...				about 1 year ago
don't skip the last tig	Sergey Koren	More...				about 1 year ago
Save aligned CIGAR to .cns output files for later dumping to .bam files; options cnsAlign and bamOutput control this. Bump on-disk tig format version to 2.	Brian P. Walenz	More...				about 1 year ago

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