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Analyzed 1 day ago. based on code collected 1 day ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jan 21, 2025 — Jan 21, 2026 Showing page 1 of 4 Search / Filter on:
Mapreduce approach works * Index is built based on features instead of creating empty and filling/culling afterwards * Header is included * Index uses byte offsets rather than feature names	Jan Aerts	More...				over 16 years ago
First version using mapreduce approach => both map and reduce are fast, but sort in between is slow	Jan Aerts	More...				over 16 years ago
Level#resolution only calculated once: set as instance variable	Jan Aerts	More...				over 16 years ago
Able to create culled file	Jan Aerts	More...				over 16 years ago
Added number of nodes per level in header B. Able to create actual empty structure (non-culled).	Jan Aerts	More...				over 16 years ago
Altered manual creation of minimal example to include nr of nodes per level in header B	Jan Aerts	More...				over 16 years ago
Able to create header	Jan Aerts	More...				over 16 years ago
Added methods and tests to extract actual features from source file	Jan Aerts	More...				over 16 years ago
Added actual example BED data file and adjusted feature byte offsets in example index	Jan Aerts	More...				over 16 years ago
Removed unused code	Jan Aerts	More...				over 16 years ago
Annotated create_minimal_example script. Created master script for running all tests.	Jan Aerts	More...				over 16 years ago
Added chromosome lengths to header to allow for non-human and non-NCBI36 scaffolds to be used	Jan Aerts	More...				over 16 years ago
Working version (only for reading file) with multi-part header	Jan Aerts	More...				over 16 years ago
More meta-information stored in index and sanitized byte offsets. * Now also stored in index file: node_byte_size and total_nr_nodes Renamed: header_length to header_byte_size * Level.byte_offset is now relative to end of header instead of absolute (i.e. relative to beginning of file)	Jan Aerts	More...				over 16 years ago
Removed unused prerequisites such as DataMapper	Jan Aerts	More...				over 16 years ago
Added Container#header	Jan Aerts	More...				over 16 years ago
Aggregates now calculated in all parent_nodes	Jan Aerts	More...				over 16 years ago
First version working with binary file	Jan Aerts	More...				over 16 years ago
Features and nodes now loaded faster, using SQL import file. Fixed bug in query.	Jan Aerts	More...				over 16 years ago
Changed sample files	Jan Aerts	More...				over 16 years ago
Big cleanup of unused methods and commented-out code	Jan Aerts	More...				over 16 years ago
Fixed bug in calculation level now that base_size can be different from nr_children	Jan Aerts	More...				over 16 years ago
Bp size of bottom bins does not have to be the same as the nr of children for nodes.	Jan Aerts	More...				over 16 years ago
Changed README file	Jan Aerts	More...				over 16 years ago
Added some more queries to main lib script	Jan Aerts	More...				over 16 years ago
Commented out aggregate methods	Jan Aerts	More...				over 16 years ago
Container#query calculates node_ids directly instead of ploughing from level to level	Jan Aerts	More...				over 16 years ago
Aggregation now done at the moment of feature loading	Jan Aerts	More...				over 16 years ago
Structure now created based on features, so sparse and much smaller DB size. Still to do: fix querying.	Jan Aerts	More...				over 16 years ago
General cleanup. Child/Node IDs stored as range rather than complete list of IDs.	Jan Aerts	More...				over 16 years ago

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