| move napus-related plotting scripts to a separate script |
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over 11 years ago
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| check center instead of start in plotting track labels in graphics.karyotype |
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over 11 years ago
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| add thousands param to utils.table.write_csv() |
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over 11 years ago
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| prevent nsorted files to be globbed in formats.sam.merge() |
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over 11 years ago
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| fix formats.gff.GffLine.id to quote with safechars |
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over 11 years ago
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| remove option --gff3 in formats.gff.format() |
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over 11 years ago
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| properly set gff3 type in formats.gff.Gff() |
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over 11 years ago
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| add annotation.stats.genestats() |
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over 11 years ago
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| add formats.vcf.refallele() |
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over 11 years ago
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| allow parsing simple vcf file in formats.vcf.mstmap() |
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over 11 years ago
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| remove option --plot in assembly.geneticmap.ld() |
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over 11 years ago
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| Minor fix to formats.gff.format() multiparents `merge` operation |
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over 11 years ago
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| add variation.snp.mpileup() |
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over 11 years ago
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| add variation.snp.freebayes() |
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over 11 years ago
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| add variation.snp.rmdup() |
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over 11 years ago
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| Organize formats.gff.format() options in groups, augment `--multiparents` option to allow split/merge of features shared by multiple parents; Add new "topological" sort method to formats.gff.sort(); Allow users to specify multiple DB queries separated by ";" in utils.db.query(); added new push notification api "notify my android" to apps.base.pushnotify(); fix some pluralization steps in annotation.ahrd.fix() |
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over 11 years ago
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| avoid fitting to lognormal when --nofit option is on in apps.ks.multireport() |
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over 11 years ago
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| remove TeX font formatting for graphics scripts |
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over 11 years ago
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| move graphics.dotplot.draw_cmap() to graphics.base; call draw_cmap in assembly.geneticmap |
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over 11 years ago
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| simplifify formats.gff.note() |
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over 11 years ago
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| use absolute path for creating links in formats.sam.merge() |
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over 11 years ago
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| add formats.sam.merge() |
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over 11 years ago
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| add option --nosort to formats.sam.bcf() |
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over 11 years ago
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| minor adjustment to allow contents to fill in one canvas in graphics.paper.napuscov() |
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over 11 years ago
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| allow multiple-to-multiple plotting in graphics.paper.napuscov() |
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over 11 years ago
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| add graphics.paper.napuscov() |
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over 11 years ago
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| add graphics.coverage |
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over 11 years ago
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| connect expression panel with synteny panel in graphics.paper.napusexp() |
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over 11 years ago
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| add graphics.paper.napusexp() |
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over 11 years ago
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| update all references to default grid project code; reorganize a few lines of code within utils.db.connect() |
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over 11 years ago
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