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Commits : Listings

Analyzed over 1 year ago. based on code collected over 1 year ago.
Feb 13, 2023 — Feb 13, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Merge branch 'releases/Release_2_11_1_Branch' of http://source.jalview.org/git/jalview into releases/Release_2_11_1_Branch
Jim Procter
More... over 4 years ago
JAL-3577 Quick fix adding quotation marks for findProperty("JALVIEW_VERSION")==null...
Ben Soares
More... over 4 years ago
JAL-3577 Quick fix adding quotation marks for findProperty("JALVIEW_VERSION")==null...
Ben Soares
More... over 4 years ago
JAL-3758 2.11.1.2 patch release notes and version bump
Jim Procter
More... over 4 years ago
JAL-3757 JAL-3689 use AppletFormat.checkProtocol to resolve startup file’s retrieval protocol (sorry @benzoid for finessing you !)
Jim Procter
More... over 4 years ago
JAL-3757 JAL-3689 use AppletFormat.checkProtocol to resolve startup file’s retrieval protocol (sorry @benzoid for finessing you !)
Jim Procter
More... over 4 years ago
JAL-3751 only merge strictly contiguous ranges of mappings
gmungoc
More... over 4 years ago
JAL-3751 only merge strictly contiguous ranges of mappings
gmungoc
More... over 4 years ago
JAL-3751 only merge strictly contiguous ranges of mappings
gmungoc
More... over 4 years ago
JAL-3757 JAL-3689 Fixed checks for URLs by adding checks for https:// as well as http://
Ben Soares
More... over 4 years ago
JAL-3757 JAL-3689 Fixed checks for URLs by adding checks for https:// as well as http://
Ben Soares
More... over 4 years ago
JAL-3748 not testing for sequence’s containment in mapped range breaks CDS reconstruction but allows testAlignProteinAsDna_incompleteStartCodon to pass
Jim Procter
More... over 4 years ago
Merge branch 'develop' into bug/JAL-3753_resources_duplicated_in_jalview_jar
Ben Soares
More... over 4 years ago
JAL-3748 fix compilation error
Jim Procter
More... over 4 years ago
JAL-3748 maximal test for JAL-3748 using covid19 CDS/Protein
Jim Procter
More... over 4 years ago
JAL-3477 Added 10k leeway to amount of memory reserved for OS test for float rounding errors (needed to fix failing test)
Ben Soares
More... over 4 years ago
JAL-3753 Resources seen in tests and appropriate filters now being used as file opt-in rather than opt-out.
Ben Soares
More... over 4 years ago
JAL-3748 more tests verifying reconstruction of AlignemntView for linked CDS/Protein alignment and selected region
Jim Procter
More... over 4 years ago
JAL-3748 reusable assert to trace specific issues with recovering the correct Sequence/Mapping (highlights points of failure for AlignmentUtilsTests with patch
Jim Procter
More... over 4 years ago
JAL-3748 allow AlignedCodonFrame.covers to optionally only require coverage for either originating or mapped sequence.
Jim Procter
More... over 4 years ago
JAL-3748 test data for SplitFrameTest
Jim Procter
More... over 4 years ago
JAL-3748 don’t trash start/end on SequenceI reconstructed from a SeqCigar via SeqsetUtils.SeqCharacterUnhash
Jim Procter
More... over 4 years ago
JAL-3748 simple test for SeqCigar preservation of start/end and name for different ways of constructing SeqCigar and reconstructing alignment sequences
Jim Procter
More... over 4 years ago
JAL-3748 additional asserts to verify start/end after reconstructing sequence from seqCigar
Jim Procter
More... over 4 years ago
Merge branch 'merge_review/JAL-3490_2_11_2_develop' into develop
Jim Procter
More... over 4 years ago
JAL-3753 put resources in gradle run and test path
Ben Soares
More... over 4 years ago
JAL-3753 JAL-3754 first rejig
Ben Soares
More... over 4 years ago
JAL-3594 Different icon/getdown styling when launching jalview built with -PCHANNEL=DEVELOP
Ben Soares
More... over 4 years ago
Merge branch 'releases/Release_2_11_1_Branch'
Jim Procter
More... over 4 years ago
JAL-3675 release notes for JAL-3750 JAL-3751
Jim Procter
More... over 4 years ago