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Analyzed about 14 hours ago. based on code collected about 14 hours ago.
Aug 10, 2024 — Aug 10, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Merge pull request #20 from lpantano/master
Rory Kirchner
More... over 10 years ago
fix SLURM without user accounts
Lorena
More... over 10 years ago
Remove pickling section.
Rory Kirchner
More... almost 11 years ago
v0.3.6: Support SLURM installations that do not use accounts, skip finding and passing an account flag
chapmanb
More... almost 11 years ago
v0.3.5: Fix minconcores specification to be passed correctly to controllers.
chapmanb
More... almost 11 years ago
v0.3.4: Support mincores on SGE systems for consolidating multiple engine jobs
chapmanb
More... almost 11 years ago
v0.3.3: Improve mincore specification for multicore jobs limited by memory. Better defaults for interruptible systems when requeuing controllers
chapmanb
More... almost 11 years ago
v0.3.2: Increase timeout for removing non-responsive engines to enable runs on interruptible queues.
chapmanb
More... almost 11 years ago
Fixes for PBSPro. Thanks to Piet Jones.
roryk
More... almost 11 years ago
v0.3.1: Make mincores and cleanup fixes available
chapmanb
More... almost 11 years ago
Pass profile and cluster information with view to enable controller/engine cleanup via API call. Enables additional cleanup from bcbio-nextgen
chapmanb
More... almost 11 years ago
Ensure multiengine batch scripts launch initial engines in background to avoid blocking on first submitted
chapmanb
More... almost 11 years ago
Fixes for mincores specification: avoid creating multiple engines with multicore jobs and ensure profile and log directory parameters filled
chapmanb
More... almost 11 years ago
Provide resource based parameter: '-r mincores=n' which requires engines use at least n cores. Launches multiple engines on a single machine based on core specification
chapmanb
More... almost 11 years ago
v0.3.0: make clusters usable after any engines have registered instead of requiring all to improve start up time (chapmanb/bcbio-nextgen#532). Change default SLURM time limit to 1 day instead of long cluster wide defaults
chapmanb
More... about 11 years ago
v0.2.24: Have start_local use num_jobs instead of cores per job thanks to @alexbw (#14)
chapmanb
More... about 11 years ago
Close client in the try block.
roryk
More... about 11 years ago
Ensure export of LD_LIBRARY_PATH to SGE engine and controller. Some environmental variables filtered in the latest Grid Engine release
chapmanb
More... about 11 years ago
Fix to correctly handle SGE case where pename specified on command line. Thanks to Karl Gutwin
chapmanb
More... about 11 years ago
Force num_jobs, core_per_job and start_wait to be integers.
roryk
More... about 11 years ago
Fix for too many open filehandles error on startup.
roryk
More... about 11 years ago
Generalize SGE support for additional cases: systems without queues, different memory allocation types and advanced reservations. Thanks to Karl Gutwin
chapmanb
More... about 11 years ago
v0.2.23: Prioritize eth interfaces when choosing ipcontroller IPs to make better choices on clusters with multiple IPs: chapmanb/bcbio-nextgen#416
chapmanb
More... about 11 years ago
v0.2.22: pick first valid address for getting public IP on an interface (chapmanb/bcbio-nextgen#416). Add additional lxc created interface to avoid.
chapmanb
More... about 11 years ago
Bail out if engines that were once running disappear during startup.
roryk
More... about 11 years ago
v0.2.21: Move fix for public IPs into IPController class so correctly executed on controller machine. chapmanb/bcbio-nextgen#416
chapmanb
More... over 11 years ago
v0.2.20. Ensure network interfaces discovered by IPython do not include VM and Docker IPs. chapmanb/bcbio-nextgen#416
chapmanb
More... over 11 years ago
v0.2.19; increase memory for IPython controller on SLURM to handle larger parallelization
chapmanb
More... over 11 years ago
Match target procs to OS X limit to make it easier to run/test on OSX. Fixes #18
chapmanb
More... over 11 years ago
Prefer output from bparams -a for determining LSF config.
roryk
More... over 11 years ago