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Commits : Listings

Analyzed about 9 hours ago. based on code collected 1 day ago.
May 15, 2023 — May 15, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
Improve API docs for bgzf_mt
James Bonfield
More... over 1 year ago
Merges neighbouring I and D ops into one op within pileup. (PR #1552)
James Bonfield
More... over 1 year ago
Expand CRAM API a bit to cope with new samtools cram_size command. (PR #1546)
James Bonfield
More... over 1 year ago
Speed up load_ref_portion.
James Bonfield
More... over 1 year ago
Uodate copyright for winter release.
Andrew Whitwham
More... over 1 year ago
Add CRAM SQ/M5 header checking when specifying a fasta file. (PR #1522)
James Bonfield
More... over 1 year ago
Remove a bottleneck in VCF header processing
pd3
More... over 1 year ago
Happy New Year
Rob Davies
More... over 1 year ago
Don't error when making an iterator on a tid not in the index
Rob Davies
More... over 1 year ago
Make bcf_hdr_idinfo_exists() more robust
Petr Danecek
More... over 1 year ago
Catch errors from bgzf_getline() in hts_readlist, hts_readlines
Rob Davies
More... over 1 year ago
Use correct type for ret in vcf_write()
Rob Davies
More... over 1 year ago
Make tbx_parse1 work for lines longer than 2Gbytes
Rob Davies
More... over 1 year ago
Cap bgzf_getline return value to INT_MAX
Rob Davies
More... over 1 year ago
exit early on error
Bergur Ragnarsson
More... over 1 year ago
Cut down the number of embed_ref=2 tests that get run
Rob Davies
More... over 1 year ago
fix memory leak
Bergur Ragnarsson
More... over 1 year ago
Switch MacOS CI tests to an ARM-based image
Rob Davies
More... over 1 year ago
Make bcf_hdr_seqnames() work with gapped chromosome ids
Petr Danecek
More... over 1 year ago
Remove variable redeclaration warnings from perl test script
Petr Danecek
More... over 1 year ago
Make it easier to modify shared library permissions during install
James Bonfield
More... over 1 year ago
draft fix
Bergur Ragnarsson
More... over 1 year ago
Ensure strings in config_vars.h are escaped correctly
Rob Davies
More... over 1 year ago
Fix build on ancient versions of gcc
Rob Davies
More... over 1 year ago
Fix ref fix from c91804c
James Bonfield
More... over 1 year ago
Fix buffer read-overrun in bam_plp_insertion_mod.
James Bonfield
More... over 1 year ago
Rework / add new faidx tests
Rob Davies
More... over 1 year ago
Check for invalid BC tags in fastq output.
James Bonfield
More... over 1 year ago
Warn if ref file is given but it doesn't contain the refs we need.
James Bonfield
More... over 1 year ago
Add an fai_line_length function.
James Bonfield
More... over 1 year ago