| Update install target with new scripts (and "_" naming) |
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over 18 years ago
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| Add greylag_merge. Changes to result pickle format to simplify merging. |
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over 18 years ago
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| Zap .bz2 compression |
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over 18 years ago
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| Update some unit tests. |
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over 18 years ago
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| Rename python scripts to make them importable. |
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over 18 years ago
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| Eliminate spectra w/candidates statistic. |
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over 18 years ago
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| add proper duplicate peptide merging to -grind; plus dup db label fix |
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over 18 years ago
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| Check sequence db locus name uniqueness |
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over 18 years ago
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| Add basic consistency check for spectrum indices |
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over 18 years ago
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| Change parent tolerance to mz units (scaling by charge) |
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over 18 years ago
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| update TODO list |
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over 18 years ago
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| greylag-sqt: order output by spec number, plus bug fixes |
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over 18 years ago
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| Merge redundant peptides, in a hacky way. |
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over 18 years ago
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| Rudimentary SQT file generation works; plus other fixes/refactoring |
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over 18 years ago
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| basic search runs (w/pickle output only) |
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over 18 years ago
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| filtering bug fixes; basic filtering now works |
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over 18 years ago
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| do MyriMatch-style filtering; add min/max parent mass params |
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over 18 years ago
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| revamped param file; spectrum slice reading; spec index to pickle |
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over 18 years ago
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| rename uniprocess search program to greylag-grind |
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over 18 years ago
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| greylag-index-spectra: check for spectrum name order and uniqueness |
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over 18 years ago
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| greylag: add --version flag |
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over 18 years ago
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| new command greylag-index-spectra (trivial ms2 offset index) |
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over 18 years ago
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| begin redesign after reading Tabb et al paper re Myrimatch |
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over 18 years ago
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| use pid in profile filenames, so multiple profiles can be simultaneous better clean up of profile data file whitespace cleanup |
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over 18 years ago
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| Fix printf vs size_t portability buglet. |
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almost 19 years ago
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| Assume 'greylag' in $PATH, rather than explicitly naming |
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almost 19 years ago
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| Makefile fixups: -fPIC, install greylag-mp, etc |
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almost 19 years ago
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| Choose default output filename based on parameter filename. |
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almost 19 years ago
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| Add yeast database for testing, and some tests. |
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almost 19 years ago
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| Add -P option to override XML parameters on command-line. |
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almost 19 years ago
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