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Functional Genomics Experiment (FuGE)
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Commits
: Listings
Analyzed
about 2 years
ago. based on code collected
over 2 years
ago.
Nov 28, 2022 — Nov 28, 2023
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Modified model.uri as per http://www.andromda.org/jira/browse/ANDROMDAPP-40 as some people were having the problem mentioned there. (Changed from file:${project.build.sourceDirectory})
allysonlister
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over 17 years ago
just realized had never added the basic site and changes docs to subversion. Added a top-level URL to the pom to prevent the mvn site:site command from complaining. Added a number of new eager loading tags to some association ends. Further details are in the docs.
allysonlister
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over 17 years ago
removed erroneous dependency within the mapping pom.xml file. Added CARMEN repositories to top-level pom file so that the XSD STK's fuge-jaxb2 jar may be automatically downloaded as needed. Fixed typo in docs.
allysonlister
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over 17 years ago
Added code for marshalling/unmarshalling GenericMaterialMeasurement (was missed out the first time). There were a number of associations that have been tagged to lazy = false (documented in the apt files). This changes the UML.
allysonlister
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over 17 years ago
added all *.uml2 files so that there won't be a problem with running mvn install the first time a user runs it, before the andromda profiles have been downloaded by maven.
allysonlister
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over 17 years ago
Removed copyright symbols from the documentation within OntologyType. Such copyright symbols are passed on to the XSD when the XSD is generated. While not a problem for some users (e.g. my install of Hardy Heron), it does seem to give problems for Windows users. When the non-standard symbol is put into the xsd, the schema will not validate on those systems and the JAXB2 code will not be made.
allysonlister
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over 17 years ago
The first commit of this STK included methods that were for generating random xml. This was a mistake, and a holdover from older code. The random-xml generation code is already correctly stored within the FuGE XSD STK, and therefore should not be in this code. This commit removes those methods.
allysonlister
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over 17 years ago
Accidentally used createIdentifiable() when should have used DatabaseObjectHelper.getOrCreate(). Also, reformatted code.
allysonlister
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over 17 years ago
accidentally committed this file when adding the docs subdirectory. Going back to the original now! Whoops...
allysonlister
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over 17 years ago
Added a section for documents, and put in the current draft of the Abstract for the poster for the MGED Meeting in September
allysonlister
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over 17 years ago
Fixed small mistake with objectVersion where visibility must be public (not protected) in UML for EJB3 cartridge. EJB3 cartridge will generate correct code though when seeing <<Version>> stereotype.
lhermida
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over 17 years ago
Added protected objectVersion : long [0..1] attribute to Describable with <<Version>> EJB3 cartridge applied stereotype. This then outputs a new object property for every FuGE object with the @Version EJB 3.0 persistence annotation. EJB 3.0/JPA will then automatically use this column to provide row-level optimistic locking which is more performant and scalable to than the default Serializable method used with entity beans.
lhermida
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over 17 years ago
Realized that it would be a good idea to have a wrapper class around the standard EntityService.save() method that would allow the developers making use of this STK to add core logic without having to change the EntityService itself. Implemented this by adding DatabaseObjectHelper.save(), and then refactoring the code. Tested against the unit tests, all OK.
allysonlister
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over 17 years ago
Added PDF documentation from wiki on how to set up and build entire EJB 3.0 STK
lhermida
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over 17 years ago
Added PDF documentation from wiki on how to set up and build entire EJB 3.0 STK
lhermida
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over 17 years ago
Fixed JBoss dependencies in top level pom.xml and turned off repository snapshot updates which is required
lhermida
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over 17 years ago
Added AndroMDA dependencies for FuGE EJB 3.0 STK
lhermida
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over 17 years ago
Initial commit of FuGE EJB 3.0 STK
lhermida
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over 17 years ago
Changed the isQuery setting from false to true for getIdentifiable() (both versions of the method) and getDescribable() within EntityService. This just shows in the UML that these methods do not change the state of the database.
allysonlister
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over 17 years ago
Incorrect copyright statement in EntityServiceImpl.java, and incorrect directory name in a comment of pom.xml
allysonlister
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over 17 years ago
just fixed some bugs in the book generation files
allysonlister
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over 17 years ago
removed accidentally-committed .project and .classpath info
allysonlister
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over 17 years ago
initial commit of fuge hibernate stk
allysonlister
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over 17 years ago
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