FreeBSD Ports

math/R-cran-car: update to 2.1-1. Changes: * Use explicit pkg-plist instead of autoplist. Using an explicit pkg-plist is more robust against "silent" errors or changes. ChangeLog: - influencePlot now returns Cook's distance, not its square ... [More] root. - Anova() now supports "coxme" objects (produced by coxme() in coxme package) (request of Philipp Sprenger). - Anova() now works via its default method with "vglm" objects produced by functions in the VGAM package; and the default method of linearHypothesis() again works with these objects (problem reported by Michael Friendly). - Fixed Anova.coxph() so that it takes account of method (ties) argument (bug reported by Karl Ove Hufthammer). - Improvements to Anova.default() so that a wider variety of model classes are accommodated (following request of Liviu Andronic.) - dataEllipse() now throws an error if there are too few colors for the number of groups (fixing bug reported by Ottorino Pantani). - spreadLevelPlot.lm() now includes an optional smoother in addition to the fitted straight line (suggestion of Michael Friendly). - No longer import methods (as opposed to generics) directly from pbkrtest. - Added axis.ticks argument to scatter3d() (code contributed by David Winsemius). [Less]

Add explicit USES=gperf

Deprecate and expire in 1 month. No ports currently depend on graphics/py-imaging, and graphics/py-pillow tracks the fork that is actually being maintained (PIL's last release is from 2009). PR: 207111 Approved by: [email protected] (maintainer)

Backport two Pillow security fixes. Pillow 3.1.1 was released a few days ago [1], and some of the security fixes in that release also apply to PIL: * https://github.com/python-pillow/Pillow/commit/bcaaf97f4ff25b3b5b9e8efeda364e17e80858ec * ... [More] https://github.com/python-pillow/Pillow/commit/ae453aa18b66af54e7ff716f4ccb33adca60afd4 [1] https://pillow.readthedocs.org/en/3.1.x/releasenotes/3.1.1.html PR: 207054 Approved by: [email protected] (maintainer) Security: a8de962a-cf15-11e5-805c-5453ed2e2b49 Security: 6ea60e00-cf13-11e5-805c-5453ed2e2b49 Security: CVE-2016-0775 [Less]

archivers/star: revive port - update MASTER_SITES - modernize (staging, USES, manual pages, @sample) - add license information (CDDL + GPLv2) - regenerate patches (no content changes) - pass maintainer to submitter While here: - add USE_GCC=any to allow build on FreeBSD 10+ PR: 188974 Submitted by: Chris Hutchinson ([email protected])

Unbreak PDF Import extension when building with modern boost. Similar to the patch by amdmi3, link the extension with -lboost_system, but only do this in the --with-system-boost case. Doing this unconditionally would break building with the bundled ... [More] boost because only the boost headers are available and the boost libraries are not built. This is still a bit pessimal because -lboost_system may be used when it is not strictly necessary (when the system boost is old), but it is likely that this is only relevant to FreeBSD and we are in the process of upgrading boost. This fix should be acceptable upstream. Re-enable the PDF Import extension by default. When the PDF Import extension is enabled, promote boost from BUILD_DEPENDS to LIB_DEPENDS. Tested with PDFIMPORT both on and off. Also tested with PDFIMPORT on, --with-system-boost disabled, and boost removed from *_DEPENDS. PR: 207073, 199601 [Less]

- Add links for clang38 Approved by: bdrewery (maintainer implicit)

assign port to the new maintainer ([email protected]) Submitted by: [email protected] (maintainer) via private email

Update to r48156 of the FreeBSD docset (a.k.a. 10.3-R version) Approved by: doceng (implicit)

Update to r48156 of the FreeBSD docset (a.k.a. 10.3-R version) Approved by: doceng (implicit)