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Moderate Activity

Commits : Listings

Analyzed about 15 hours ago. based on code collected about 22 hours ago.
May 01, 2023 — May 01, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
created PDB writer, alternate conformations are not treated yet More... about 14 years ago
Turn on polarization for the dhfr test case More... over 14 years ago
Added support for Softcore Buffered-14-7 More... over 14 years ago
improved the PDB filters handling of HETATM entries - note that general small molecules are More... over 14 years ago
Merge branch 'master' of ssh://git.kenai.com/ffx~source More... over 14 years ago
updated force field parsing to use the Apache Commons CompositeConfiguration More... over 14 years ago
Merge branch 'master' of ssh://git.kenai.com/ffx~source More... over 14 years ago
initial crystal density functions More... over 14 years ago
implemented the Comparator<String> interface for force field types to keep them sorted; minor edits to all the FileFilters to make them consistent; moving toward using a CompositeConfiguration to hold raw force field definitions - this requires types defined over multipole lines to include the continuation character '\' at the end of each line except the last one More... over 14 years ago
add crystal reflection utilities; initial x-ray refinement code; mtz input code More... over 14 years ago
getAnisou returns null for atoms/altlocs if the ansiou has not be set More... over 14 years ago
added support for Apache commons style properties configuration; added fields and methods for storing tempFactor, ansiou and occupancy gradients within the Atom class More... over 14 years ago
turned off OpenCL FFTs for default unit testing since most platforms will not support it. More... over 14 years ago
updated the thermostats to remove linear and angular momemta More... over 14 years ago
fixed the AtomTest class More... over 14 years ago
added an OpenCL based convolution routine, created the Utilities module, updated the Atom class to store alternate conformers, added the Berendsen and Bussi thermostats More... over 14 years ago
deleted the params directory More... over 14 years ago
fix ffx startup script More... over 14 years ago
update 32 bit jogl libraries More... over 14 years ago
Another fix to PotentialEnergyTest More... over 14 years ago
propogated Tim's start up script fixes to the macosx and windows versions More... over 14 years ago
configured macosx jogl directory to match linux; fixed ForceField parameter parsing to find their new location within ffx-all.jar More... over 14 years ago
Merge branch 'master' of ssh://git.kenai.com/ffx~source More... over 14 years ago
updated gitignore More... over 14 years ago
updates for 32 vs 64 bit builds More... over 14 years ago
fixed the jnlp files to use the -Dj3d.rend=jogl flag More... over 14 years ago
deleted parsers module (parser were added to the potential module) More... over 14 years ago
added AMOEBA 2004 and AMOEBA 2009 with validation More... over 14 years ago
trying to delete references to the lib directory More... over 14 years ago
modified a few site files More... over 14 years ago