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Commits : Listings

Analyzed 1 day ago. based on code collected 1 day ago.
Nov 11, 2024 — Nov 11, 2025
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
added null check for input molecule and elaborated on comments More... 4 months ago
implemented comments and improved ring detection and aromaticity copying More... 4 months ago
Merge pull request #1204 from cdk/deps/updates-20250725 More... 4 months ago
update maven-compiler-plugin configuration to use <release> instead of <source> and <target>
Uli
More... 4 months ago
Various Maven plugin updates More... 4 months ago
Updated dependencies: CMLXOM 4.13, Log4j 2.25.1, and JUnit 5.13.3 More... 4 months ago
Merge pull request #1203 from uli-f/depict-gen-atom-property-cleanup-fix More... 4 months ago
update DepictionGenerator to remove atom value annotations; add test for atom property annotation label cleanup
Uli
More... 4 months ago
This doesn't need to be central-snapshots, it was the <repositories> which was wrong and not <distributionManagement>. More... 4 months ago
Update to BEAM 1.3.10. This adds support for lone-pairs on extended tetrahedral atoms (e.g. CN=[C@AL1]=NC). More... 4 months ago
WIP fixing issues in documentation and conformities in the code More... 4 months ago
Stabilise the comparator ordering of transformation op-codes. DeleteAtom MUST appear after DeleteBond of the bond it's involved in. This might defeat some optimisations (where we try to move ops and replace them with larger concepts - i.e. ReplaceAtom) but testing shows it to be acceptable. More... 4 months ago
Fix some issues highlighted by SonarCloud More... 4 months ago
Fix the build, the snapshots repo needs a distinct name. More... 4 months ago
Build plugin updates: PMD, compiler, and some harmonization More... 4 months ago
New deploy plugin and config for Sonatype More... 4 months ago
README updated for the latest stable release More... 4 months ago
Allow the ExtendedFingerprinter to setHashExplicitHydrogens More... 5 months ago
Remove some redundant exceptions. More... 5 months ago
Fix some corner cases in reading of stereochemistry from chair projections. Some chairs may be drawn with horizontal bonds the interpretation of which depends where on the ring we are. We now pass in the central point of the connected ring atoms to know which way (up or down) we should assign the atom. We also improve the interpretation of angled chairs. More... 5 months ago
fixed docs and corrected calculation for HashSet capacity More... 5 months ago
small test documentation fix More... 5 months ago
improved tests and documentation More... 5 months ago
refactored splitting function to improve saturation and improved documentation More... 6 months ago
Merge remote-tracking branch 'origin/main' into exhaustive_fragmenter More... 6 months ago
work in progress: added tests for pseudo-R-atom saturation and first tries to implement the pseudo-R-atom saturation More... 7 months ago
Only the static functions should use the static variable, we also need to update the test for the deprecated usage More... 7 months ago
Ensure MDLV3000 stereo 0d works correctly. More... 7 months ago
We need a static variable to be able to use it from a static context. More... 7 months ago
FIx #1183 InChITautomerGenerator on AtomContainer2 More... 7 months ago