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The Chemistry Development Kit
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Moderate Activity
Commits
: Listings
Analyzed
1 day
ago. based on code collected
1 day
ago.
Nov 11, 2024 — Nov 11, 2025
Showing page 5 of 11
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added null check for input molecule and elaborated on comments
ToLeWeiss
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4 months ago
implemented comments and improved ring detection and aromaticity copying
ToLeWeiss
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4 months ago
Merge pull request #1204 from cdk/deps/updates-20250725
John Mayfield
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4 months ago
update maven-compiler-plugin configuration to use <release> instead of <source> and <target>
Uli
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4 months ago
Various Maven plugin updates
Egon Willighagen
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4 months ago
Updated dependencies: CMLXOM 4.13, Log4j 2.25.1, and JUnit 5.13.3
Egon Willighagen
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4 months ago
Merge pull request #1203 from uli-f/depict-gen-atom-property-cleanup-fix
John Mayfield
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4 months ago
update DepictionGenerator to remove atom value annotations; add test for atom property annotation label cleanup
Uli
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4 months ago
This doesn't need to be central-snapshots, it was the <repositories> which was wrong and not <distributionManagement>.
John Mayfield
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4 months ago
Update to BEAM 1.3.10. This adds support for lone-pairs on extended tetrahedral atoms (e.g. CN=[C@AL1]=NC).
John Mayfield
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4 months ago
WIP fixing issues in documentation and conformities in the code
ToLeWeiss
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4 months ago
Stabilise the comparator ordering of transformation op-codes. DeleteAtom MUST appear after DeleteBond of the bond it's involved in. This might defeat some optimisations (where we try to move ops and replace them with larger concepts - i.e. ReplaceAtom) but testing shows it to be acceptable.
John Mayfield
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4 months ago
Fix some issues highlighted by SonarCloud
John Mayfield
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4 months ago
Fix the build, the snapshots repo needs a distinct name.
John Mayfield
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4 months ago
Build plugin updates: PMD, compiler, and some harmonization
Egon Willighagen
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4 months ago
New deploy plugin and config for Sonatype
Egon Willighagen
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4 months ago
README updated for the latest stable release
Egon Willighagen
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4 months ago
Allow the ExtendedFingerprinter to setHashExplicitHydrogens
John Mayfield
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5 months ago
Remove some redundant exceptions.
John Mayfield
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5 months ago
Fix some corner cases in reading of stereochemistry from chair projections. Some chairs may be drawn with horizontal bonds the interpretation of which depends where on the ring we are. We now pass in the central point of the connected ring atoms to know which way (up or down) we should assign the atom. We also improve the interpretation of angled chairs.
John Mayfield
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5 months ago
fixed docs and corrected calculation for HashSet capacity
ToLeWeiss
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5 months ago
small test documentation fix
ToLeWeiss
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5 months ago
improved tests and documentation
ToLeWeiss
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5 months ago
refactored splitting function to improve saturation and improved documentation
ToLeWeiss
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6 months ago
Merge remote-tracking branch 'origin/main' into exhaustive_fragmenter
ToLeWeiss
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6 months ago
work in progress: added tests for pseudo-R-atom saturation and first tries to implement the pseudo-R-atom saturation
ToLeWeiss
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7 months ago
Only the static functions should use the static variable, we also need to update the test for the deprecated usage
John Mayfield
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7 months ago
Ensure MDLV3000 stereo 0d works correctly.
John Mayfield
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7 months ago
We need a static variable to be able to use it from a static context.
John Mayfield
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7 months ago
FIx #1183 InChITautomerGenerator on AtomContainer2
John Mayfield
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7 months ago
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