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Commits : Listings

Analyzed about 6 hours ago. based on code collected about 10 hours ago.
May 01, 2023 — May 01, 2024
Commit Message Contributor Files Modified Lines Added Lines Removed Code Location Date
cram: implement block reading
Dan Kortschak
as kortschak
More... about 7 years ago
encoding/...: simplify API
Dan Kortschak
as kortschak
More... about 7 years ago
tabix: replace Read with io.ReadFull
Brent Pedersen
More... about 7 years ago
cram: implement container reading
Dan Kortschak
as kortschak
More... about 7 years ago
README: update citation request
Dan Kortschak
as kortschak
More... about 7 years ago
paper: properly mark up references
Dan Kortschak
as kortschak
More... about 7 years ago
paper/examples/flagstat: add multithreaded samtools
Dan Kortschak
as kortschak
More... about 7 years ago
codemeta.json: update version
Dan Kortschak
as kortschak
More... about 7 years ago
README: add summary, example and community guidelines
Dan Kortschak
as kortschak
More... over 7 years ago
paper/examples/flagstat: use heavier benchmark and match logic
Dan Kortschak
as kortschak
More... over 7 years ago
paper: extend summary to include citations (#64)
Dan Kortschak
More... over 7 years ago
add example replicating the functionality of samtools flagstat (#63)
Brent Pedersen - Bioinformatics
More... over 7 years ago
Merge pull request #62 from brentp/noTags
Dan Kortschak
More... over 7 years ago
handle case where b has fewer tags than a.
Brent Pedersen
More... over 7 years ago
bgzf: update spec compliance warning
Dan Kortschak
as kortschak
More... over 7 years ago
README: add godoc badge/link
Dan Kortschak
as kortschak
More... over 7 years ago
publish: add JOSS paper and metadata
Dan Kortschak
as kortschak
More... over 7 years ago
bgzf: describe issues with tabix header checks
Dan Kortschak
as kortschak
More... over 7 years ago
Merge pull request #56 from brentp/read-full
Dan Kortschak
More... over 7 years ago
bgzf: reducd allocations in Read by copying directly
Brent Pedersen
More... over 7 years ago
Merge pull request #55 from brentp/fast-index-read
Dan Kortschak
More... over 7 years ago
internal/index batch calls to binary.Read to limit reflection overhead
Brent Pedersen
More... over 7 years ago
travis: add go1.8beta1 to matrix
Dan Kortschak
as kortschak
More... over 7 years ago
bgzf: fix magic block detection
Dan Kortschak
as kortschak
More... over 7 years ago
bam: handle empty chunks during iterator creation
Dan Kortschak
as kortschak
More... over 7 years ago
sam: fix integer range and binary Aux encodings
Dan Kortschak
as kortschak
More... over 7 years ago
speed sam.ParseCigar (#47)
Dan Kortschak
More... over 7 years ago
speed sam.ParseCigar
Brent Pedersen
More... over 7 years ago
tabix: change Chunks signature to resemble csi and bam
Dan Kortschak
as kortschak
More... over 7 years ago
bam: protect aux tags from append overwrites by user
Dan Kortschak
as kortschak
More... over 7 years ago