| remove passwords |
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over 17 years ago
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| add dummy "tb1importer" user to own imported submissions |
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over 17 years ago
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| precalculate dimensions of submitted matrices |
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over 17 years ago
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| comment out inappropriate test as per RAV advice |
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over 17 years ago
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| spelling correction |
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over 17 years ago
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| add missing tests to test suites |
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over 17 years ago
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| Spelling correction |
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over 17 years ago
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| Fixed broken URL as per issue 2796466 |
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over 17 years ago
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| Adding bean configuration for canonical url resolver. |
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over 17 years ago
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| Adding /PhyloWS/* url pattern, for canonical url resolution, to servlet mapping |
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over 17 years ago
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| Adding simple implementation of canonical URL resolver. |
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over 17 years ago
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| Fixed typo in tree ID prefix |
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over 17 years ago
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| Added clickable NCBI taxon ID's and uBio namebankID's |
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over 17 years ago
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| Made tree ID's clickable. |
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over 17 years ago
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| Changed table header from "Matrix Id" to "ID" |
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over 17 years ago
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| Made table headings "nowrap", i.e. all headings are always on one line. |
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over 17 years ago
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| AnalysisSteps are now also "invalid" if there are zero input and/or output taxon labels |
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over 17 years ago
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| Added return parameters for studyCommand |
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over 17 years ago
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| Skipping previous analysis view (nested lists), importing analysisList view |
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over 17 years ago
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| Added studyService property to /SearchStudiesByKeyword web service bean, it NPE'd on that previously. |
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over 17 years ago
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| Removed old commented out cruft, added in import of the analysisList template to create a summarized, readonly view of the analyses associated with the current study. |
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over 17 years ago
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| The AnalyzedData view now folds up smaller in readonly view, where it summarizes how many AnalyzedData objects are input (or output, depending on where this template is used) objects are associated with the analysis step. |
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over 17 years ago
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| The AnalysisStep view now flags whether it is valid (i.e. output taxon labels are a subset of inputs); now also folds up smaller in readonly view, where it omits all null fields. |
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over 17 years ago
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| This file now imports analysisList.jsp as an editable view of the analyses associated with a study. |
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over 17 years ago
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| This file now contains the new view template for analyses, coded such that it can be used in an editable and in a readonly mode (for submission and search sections). The top of the file gives a brief usage for importing it into other files. |
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over 17 years ago
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| Broke up long construct to ease debugging. |
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over 17 years ago
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| Added public Collection<String> getNexusFileNames(), to return the names of all uploaded nexus files for this study. |
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over 17 years ago
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| Added icons for download links of reconstituted nexus files in right hand side menu in the submission section (/user/) |
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over 17 years ago
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| The right hand side menu now correctly flags for analyses whether either there is an empty set (grey font), a collection of valid analysis steps, or the presence of one or more invalid analysis steps, where taxon labels are produced in the output that are not defined in the input. Also, the right hand side menu now lists all uploaded nexus files, with direct download links to reconstituted versions of these uploaded files. |
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over 17 years ago
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| Aded nexusFileNames, a list of anonymous JSON objects with an id property whose value is the local name of an uploaded nexus file (i.e. "foo.nex", but possibly much weirder strings, so beware!) |
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over 17 years ago
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