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Analyzed about 22 hours ago. based on code collected 2 days ago.

Commit Message	Contributor	Files Modified	Lines Added	Lines Removed	Code Location	Date
Jun 02, 2025 — Jun 02, 2026 Showing page 3 of 8 Search / Filter on:
fix no NULL or '' strain	qPCR4vir	More...				over 8 years ago
don't duplicate sequences names	qPCR4vir	More...				over 8 years ago
who enter original data?	qPCR4vir	More...				over 8 years ago
CREATE VIEW pending_seq_to_excel	qPCR4vir	More...				over 8 years ago
introduce the concepts of "consolidated" strains and isolate. In opposition to isolate_seq and strain_isolate which hold all the original data PARTIALLY implemented in previous commit !!!!	qPCR4vir	More...				over 8 years ago
introduce the concepts of "submission" in contrast to reference	qPCR4vir	More...				over 8 years ago
parsing seq references from GB	qPCR4vir	More...				over 8 years ago
BioSQL ??	qPCR4vir	More...				over 8 years ago
extract def save_or_find_seq(db_cursor, record):	qPCR4vir	More...				over 8 years ago
extract def parse_GB_note(note):	qPCR4vir	More...				over 8 years ago
extract reuse_GBdefinition_to_find_strain_isolate(definition, isolate, strain):	qPCR4vir	More...				over 8 years ago
don't duplicate original seq by alignment parsing	qPCR4vir	More...				over 8 years ago
feature synonyms(self, Id_taxa, names)	qPCR4vir	More...				over 8 years ago
FIX superfluous comma make unique	qPCR4vir	More...				over 8 years ago
parseGB(db, GB_flat_file)	qPCR4vir	More...				over 8 years ago
FIX: allow repeated strain names	qPCR4vir	More...				over 8 years ago
code review, fix small errors, use country_iso3 instead iso3	qPCR4vir	More...				over 8 years ago
parse references and ref schemas	qPCR4vir	More...				over 8 years ago
feature/fix - use columns names not fixed numbers	qPCR4vir	More...				over 8 years ago
Lu and ICVT ref seq collection	qPCR4vir	More...				over 8 years ago
actualized with R reference sequences from ICVT, 2016	qPCR4vir	More...				over 8 years ago
complete the taxon tree	qPCR4vir	More...				over 8 years ago
almost reconstruct back the parsed excel file	qPCR4vir	More...				over 8 years ago
VIEW taxa_tree tested	qPCR4vir	More...				over 8 years ago
proposing simplified and consensus features	qPCR4vir	More...				over 8 years ago
Implement a taxa tree "easily" traversable with SQL	qPCR4vir	More...				over 8 years ago
FIX no Id_isolate was saved	qPCR4vir	More...				over 8 years ago
extract build_ref_pos(Seq, beg, end, Al_len) fixing possible len error and using str instead of seq record, now using seq.replace('-',''). Fix use of first seq as ref if no ref was proposed	qPCR4vir	More...				over 8 years ago
optimize SQL WHERE order: Name='M73218' AND Id_align=1 (from 93 to 1 ms)	qPCR4vir	More...				over 8 years ago
optimize SQL USING JOIN (from 40 to 9 ms )	qPCR4vir	More...				over 8 years ago

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